Variant report

Variant	rs35460138
Chromosome Location	chr15:59385399-59385400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10431762	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10431791	0.82[ASN][1000 genomes]
rs10431792	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518996	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1074701	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1074702	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10851642	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10851643	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11539756	0.85[AMR][1000 genomes]
rs11635820	0.83[ASN][1000 genomes]
rs11852461	0.82[ASN][1000 genomes]
rs12101733	0.81[ASN][1000 genomes]
rs12437587	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12438111	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12438208	0.88[AMR][1000 genomes]
rs12438962	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12440692	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12441973	0.88[AMR][1000 genomes]
rs12442086	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12442134	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12442301	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12900369	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12902628	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906212	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12907187	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12907277	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12907957	0.80[ASN][1000 genomes]
rs12910987	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12912429	0.85[ASN][1000 genomes]
rs12913177	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12915899	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12917373	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1345116	0.81[ASN][1000 genomes]
rs1374156	0.84[ASN][1000 genomes]
rs1446239	0.82[ASN][1000 genomes]
rs16940998	0.86[ASN][1000 genomes]
rs16941014	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17236369	0.82[ASN][1000 genomes]
rs17236453	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17302163	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1809588	0.80[ASN][1000 genomes]
rs1867757	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1971181	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2121236	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2121237	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289895	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2414619	0.86[ASN][1000 genomes]
rs28391430	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28514475	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28610479	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2899640	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34338282	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34407560	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34718679	0.84[ASN][1000 genomes]
rs34859729	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34977427	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35066133	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35168204	0.82[AMR][1000 genomes]
rs35204615	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35555888	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35769647	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36125140	0.84[ASN][1000 genomes]
rs3794501	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4531679	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774321	0.86[ASN][1000 genomes]
rs4775110	0.81[ASN][1000 genomes]
rs4775111	0.86[ASN][1000 genomes]
rs4775114	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4775115	0.85[ASN][1000 genomes]
rs57361749	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58087223	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58335303	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58417366	0.82[ASN][1000 genomes]
rs59282449	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59514650	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60262196	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60741546	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62002516	0.84[ASN][1000 genomes]
rs62002543	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62002544	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62004080	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6494054	0.84[ASN][1000 genomes]
rs6494064	0.84[ASN][1000 genomes]
rs6494065	0.81[ASN][1000 genomes]
rs6494069	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71480503	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165028	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7165817	0.86[ASN][1000 genomes]
rs7168102	0.81[ASN][1000 genomes]
rs7173135	0.83[ASN][1000 genomes]
rs7175246	0.84[ASN][1000 genomes]
rs7176281	0.82[ASN][1000 genomes]
rs7176576	0.84[ASN][1000 genomes]
rs7178935	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73418863	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73418864	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs755786	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8025246	0.82[ASN][1000 genomes]
rs8026611	0.83[ASN][1000 genomes]
rs8027536	0.82[ASN][1000 genomes]
rs8028764	0.84[ASN][1000 genomes]
rs8036907	0.81[AMR][1000 genomes]
rs8037569	0.84[ASN][1000 genomes]
rs8040456	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041221	0.85[ASN][1000 genomes]
rs8042516	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042896	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs877269	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9302206	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:59355600-59392800	Strong transcription	Liver	Liver
6	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
7	chr15:59355800-59386800	Weak transcription	Stomach Mucosa	stomach
8	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:59365800-59390600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:59366400-59390600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:59367400-59390800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:59367600-59390200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:59367600-59390600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:59367800-59389800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:59368200-59389800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:59368200-59390200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:59368200-59392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:59368600-59389800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:59371600-59392800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:59371800-59389200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:59372400-59386000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:59372400-59386000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:59372400-59390400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:59373000-59386000	Strong transcription	Fetal Intestine Large	intestine
26	chr15:59373000-59386000	Strong transcription	Fetal Thymus	thymus
27	chr15:59373000-59389200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr15:59373000-59389200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr15:59373000-59390400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:59373200-59386000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:59373600-59387000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:59374000-59396800	Weak transcription	Ovary	ovary
33	chr15:59374200-59389400	Weak transcription	Fetal Brain Male	brain
34	chr15:59374200-59396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr15:59374200-59396800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:59374200-59396800	Weak transcription	Right Ventricle	heart
37	chr15:59374400-59396800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:59376000-59389800	Strong transcription	Primary B cells from cord blood	blood
39	chr15:59376000-59389800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:59376200-59389600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:59376600-59389200	Strong transcription	Fetal Lung	lung
42	chr15:59377200-59388800	Weak transcription	Esophagus	oesophagus
43	chr15:59377200-59397000	Weak transcription	Gastric	stomach
44	chr15:59377400-59390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:59378000-59386200	Weak transcription	Fetal Kidney	kidney
46	chr15:59378200-59389800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr15:59378600-59390000	Strong transcription	Dnd41	blood
48	chr15:59378800-59390200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:59379200-59389600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:59379400-59387400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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