Variant report

Variant	rs4775110
Chromosome Location	chr15:59315884-59315885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10431791	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10431792	0.86[ASN][1000 genomes]
rs10518996	0.90[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1074701	0.84[ASN][1000 genomes]
rs10851643	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11071405	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11635820	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11852461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11855536	0.86[CEU][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12050865	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12101733	0.92[ASN][1000 genomes]
rs12437587	0.86[ASN][1000 genomes]
rs12438111	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12438128	0.86[ASN][1000 genomes]
rs12438208	0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12438962	0.87[ASW][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap]
rs12440692	0.81[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12442086	0.81[JPT][hapmap]
rs12900369	0.82[ASN][1000 genomes]
rs12902628	0.82[ASN][1000 genomes]
rs12906212	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs12907187	0.82[ASN][1000 genomes]
rs12907957	0.88[AMR][1000 genomes]
rs12913177	0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs12915899	0.85[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs1345116	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1374155	0.95[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374156	0.89[ASN][1000 genomes]
rs1446237	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1446238	0.94[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1446239	0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1665049	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1665050	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1665051	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1693532	0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs16940998	0.95[CEU][hapmap];0.96[MEX][hapmap];0.85[AMR][1000 genomes]
rs17236369	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17236383	0.81[ASW][hapmap];0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17302142	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17302163	0.86[ASN][1000 genomes]
rs17302191	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes]
rs1867757	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1968606	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968607	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1975534	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2084161	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs2121236	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2121237	0.82[ASN][1000 genomes]
rs2289895	0.80[CHD][hapmap];0.83[MEX][hapmap]
rs2414618	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28391430	0.82[ASN][1000 genomes]
rs28514475	0.82[ASN][1000 genomes]
rs28610479	0.82[ASN][1000 genomes]
rs2899640	0.81[JPT][hapmap]
rs34338282	0.82[ASN][1000 genomes]
rs34718679	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34977427	0.86[ASN][1000 genomes]
rs35066133	0.86[ASN][1000 genomes]
rs35204615	0.82[ASN][1000 genomes]
rs35210199	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35460138	0.81[ASN][1000 genomes]
rs35555888	0.82[ASN][1000 genomes]
rs35658945	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4218	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4531679	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4774320	0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4774321	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4775111	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4775115	0.82[AMR][1000 genomes]
rs57557135	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58335303	0.89[ASN][1000 genomes]
rs58417366	0.92[ASN][1000 genomes]
rs59540276	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61022867	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62002516	0.97[ASN][1000 genomes]
rs6494054	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.96[ASN][1000 genomes]
rs6494064	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs6494065	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs6494069	0.81[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7165028	0.89[ASN][1000 genomes]
rs7168102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173135	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175215	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7175246	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175490	0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7176281	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7176576	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178935	0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs73418863	0.81[ASN][1000 genomes]
rs73418864	0.82[ASN][1000 genomes]
rs8025246	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8026611	0.88[ASN][1000 genomes]
rs8027536	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8028752	0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs8028764	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8029336	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8030246	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8030323	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8031390	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8037569	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8039514	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs8040456	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8041221	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041704	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8042516	0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.83[ASN][1000 genomes]
rs8042896	0.82[ASN][1000 genomes]
rs877269	0.81[JPT][hapmap];0.85[YRI][hapmap]
rs9302206	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9788719	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
2	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:59281400-59323200	Weak transcription	Ovary	ovary
4	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
5	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
6	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:59282000-59323000	Weak transcription	Fetal Lung	lung
8	chr15:59282000-59323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:59282000-59323200	Weak transcription	Fetal Kidney	kidney
10	chr15:59282400-59323200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:59282400-59323400	Weak transcription	NHLF	lung
12	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
13	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
15	chr15:59284600-59323000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:59284800-59323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:59285000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:59285000-59328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:59285200-59323000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:59285200-59323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:59287400-59319000	Weak transcription	Brain Germinal Matrix	brain
22	chr15:59288400-59351200	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:59292200-59321600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:59293800-59317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:59295200-59349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:59295600-59323000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:59295600-59335400	Weak transcription	Lung	lung
28	chr15:59295800-59323200	Weak transcription	Thymus	Thymus
29	chr15:59297800-59323200	Weak transcription	HepG2	liver
30	chr15:59297800-59323200	Weak transcription	NH-A	brain
31	chr15:59298000-59317000	Weak transcription	Osteobl	bone
32	chr15:59298400-59323000	Weak transcription	NHDF-Ad	bronchial
33	chr15:59298600-59323000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:59298600-59323000	Weak transcription	NHEK	skin
35	chr15:59298600-59323200	Weak transcription	Adipose Nuclei	Adipose
36	chr15:59298800-59323000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:59298800-59323200	Weak transcription	HMEC	breast
38	chr15:59300000-59323000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:59300000-59324600	Weak transcription	Right Ventricle	heart
40	chr15:59301200-59335400	Weak transcription	HUVEC	blood vessel
41	chr15:59302200-59321000	Weak transcription	Left Ventricle	heart
42	chr15:59303800-59323200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:59304200-59323000	Weak transcription	K562	blood
44	chr15:59304400-59323000	Weak transcription	Psoas Muscle	Psoas
45	chr15:59305400-59323000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:59305400-59354400	Weak transcription	Gastric	stomach
47	chr15:59305800-59321400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:59306000-59323000	Weak transcription	Hela-S3	cervix
49	chr15:59306000-59353400	Weak transcription	Fetal Heart	heart
50	chr15:59306200-59323000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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