Variant report

Variant	rs1968606
Chromosome Location	chr15:59312074-59312075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59307669..59310242-chr15:59311271..59313306,2	K562	blood:
2	chr15:59306289..59309099-chr15:59310666..59312444,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10431762	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10431791	0.83[ASN][1000 genomes]
rs1074702	0.89[ASN][1000 genomes]
rs10851642	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10851643	0.88[AMR][1000 genomes]
rs11071405	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11635820	0.85[ASN][1000 genomes]
rs11852461	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11855536	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12050865	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101733	0.82[ASN][1000 genomes]
rs12438111	0.82[ASN][1000 genomes]
rs12438128	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12438208	0.93[ASN][1000 genomes]
rs12438962	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12441973	0.91[ASN][1000 genomes]
rs12442086	0.89[ASN][1000 genomes]
rs12442134	0.88[ASN][1000 genomes]
rs12442301	0.90[ASN][1000 genomes]
rs12906212	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12907548	0.83[AFR][1000 genomes]
rs12907957	0.89[AMR][1000 genomes]
rs12910987	0.87[ASN][1000 genomes]
rs12912429	0.90[ASN][1000 genomes]
rs12915899	0.87[ASN][1000 genomes]
rs12917373	0.85[ASN][1000 genomes]
rs1345116	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1374155	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1446237	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446238	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1446239	0.82[ASN][1000 genomes]
rs1665050	0.87[ASN][1000 genomes]
rs1665051	0.88[ASN][1000 genomes]
rs16940998	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16941014	0.87[ASN][1000 genomes]
rs17236369	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17236383	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17236453	0.87[ASN][1000 genomes]
rs17302142	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17302191	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1968607	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971181	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1975534	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2289895	0.87[ASN][1000 genomes]
rs2414618	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899640	0.89[ASN][1000 genomes]
rs34407560	0.90[ASN][1000 genomes]
rs34718679	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34859729	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35210199	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35658945	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35769647	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs36125140	0.89[ASN][1000 genomes]
rs3794501	0.83[ASN][1000 genomes]
rs4774320	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4774321	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775110	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775111	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775114	0.89[ASN][1000 genomes]
rs4775115	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57361749	0.87[ASN][1000 genomes]
rs57557135	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58087223	0.90[ASN][1000 genomes]
rs58335303	0.80[ASN][1000 genomes]
rs58417366	0.82[ASN][1000 genomes]
rs59282449	0.85[ASN][1000 genomes]
rs59514650	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59540276	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60262196	0.90[ASN][1000 genomes]
rs60741546	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61022867	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62002516	0.86[ASN][1000 genomes]
rs62002543	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62002544	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6494054	0.85[ASN][1000 genomes]
rs6494065	0.83[ASN][1000 genomes]
rs71480503	0.87[ASN][1000 genomes]
rs7165028	0.80[ASN][1000 genomes]
rs7168102	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7169181	0.86[ASN][1000 genomes]
rs7173135	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7175215	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7175246	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7175490	0.95[ASN][1000 genomes]
rs7176281	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7176576	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8025246	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8027536	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028752	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8028764	0.85[ASN][1000 genomes]
rs8029336	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8030246	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8030323	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8031390	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8037569	0.85[ASN][1000 genomes]
rs8041221	0.81[ASN][1000 genomes]
rs877269	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9302206	0.85[ASN][1000 genomes]
rs9788719	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
2	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:59281400-59323200	Weak transcription	Ovary	ovary
4	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
5	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
6	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:59282000-59323000	Weak transcription	Fetal Lung	lung
8	chr15:59282000-59323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:59282000-59323200	Weak transcription	Fetal Kidney	kidney
10	chr15:59282400-59323200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:59282400-59323400	Weak transcription	NHLF	lung
12	chr15:59283800-59313400	Weak transcription	Right Atrium	heart
13	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
14	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
16	chr15:59284600-59323000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:59284800-59323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:59285000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:59285000-59328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:59285200-59323000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:59285200-59323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:59287400-59319000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:59288400-59351200	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:59292200-59321600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:59293800-59317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:59295200-59349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:59295600-59323000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:59295600-59335400	Weak transcription	Lung	lung
29	chr15:59295800-59323200	Weak transcription	Thymus	Thymus
30	chr15:59297600-59314200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:59297600-59314600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:59297800-59314600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:59297800-59323200	Weak transcription	HepG2	liver
34	chr15:59297800-59323200	Weak transcription	NH-A	brain
35	chr15:59298000-59317000	Weak transcription	Osteobl	bone
36	chr15:59298400-59323000	Weak transcription	NHDF-Ad	bronchial
37	chr15:59298600-59313200	Weak transcription	Fetal Intestine Large	intestine
38	chr15:59298600-59323000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:59298600-59323000	Weak transcription	NHEK	skin
40	chr15:59298600-59323200	Weak transcription	Adipose Nuclei	Adipose
41	chr15:59298800-59312400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:59298800-59313800	Weak transcription	HSMM	muscle
43	chr15:59298800-59314400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:59298800-59323000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:59298800-59323200	Weak transcription	HMEC	breast
46	chr15:59299000-59314400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr15:59299000-59314600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr15:59300000-59323000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:59300000-59324600	Weak transcription	Right Ventricle	heart
50	chr15:59301200-59335400	Weak transcription	HUVEC	blood vessel

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