Variant report

Variant	rs35466616
Chromosome Location	chr6:36966125-36966126
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36952379..36955102-chr6:36965979..36971792,7	MCF-7	breast:
2	chr6:36951360..36957548-chr6:36964706..36970928,10	K562	blood:
3	chr6:36953080..36955220-chr6:36964655..36966214,2	MCF-7	breast:
4	chr6:36964178..36967540-chr6:36970147..36973518,3	K562	blood:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000146192	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12524747	0.82[EUR][1000 genomes]
rs12524778	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1318960	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1318961	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13217627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570116	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16889364	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1753284	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1753286	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2770123	0.89[EUR][1000 genomes]
rs4714029	0.85[ASN][1000 genomes]
rs6915109	0.81[EUR][1000 genomes]
rs6915207	0.83[EUR][1000 genomes]
rs708009	0.85[ASN][1000 genomes]
rs708011	0.86[ASN][1000 genomes]
rs708012	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs708013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739340	0.94[EUR][1000 genomes]
rs7743783	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744277	0.82[EUR][1000 genomes]
rs7762333	0.82[EUR][1000 genomes]
rs831477	0.85[EUR][1000 genomes]
rs9368977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380631	0.85[ASN][1000 genomes]
rs9394393	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470451	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5263	chr6:36941625-36972109	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv885816	chr6:36965099-36999682	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36963600-36967800	Enhancers	Pancreas	Pancrea
2	chr6:36964800-36967400	Enhancers	Fetal Muscle Trunk	muscle
3	chr6:36964800-36967600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:36965000-36966800	Enhancers	Fetal Stomach	stomach
5	chr6:36965000-36967200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:36965000-36967400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:36965000-36967600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:36965000-36967600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:36965200-36966200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:36965200-36966600	Enhancers	Ovary	ovary
11	chr6:36965200-36966800	Enhancers	Colon Smooth Muscle	Colon
12	chr6:36965200-36966800	Enhancers	Psoas Muscle	Psoas
13	chr6:36965200-36967000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:36965200-36967000	Enhancers	Spleen	Spleen
15	chr6:36965200-36967400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:36965200-36967400	Enhancers	Brain Angular Gyrus	brain
17	chr6:36965200-36967400	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:36965200-36967400	Enhancers	Left Ventricle	heart
19	chr6:36965200-36967600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:36965200-36967600	Enhancers	Brain Anterior Caudate	brain
21	chr6:36965200-36967600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:36965400-36966200	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:36965400-36966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:36965400-36966600	Enhancers	Gastric	stomach
25	chr6:36965400-36966600	Enhancers	Right Atrium	heart
26	chr6:36965400-36966600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr6:36965400-36966800	Enhancers	Adipose Nuclei	Adipose
28	chr6:36965400-36966800	Enhancers	Fetal Heart	heart
29	chr6:36965400-36966800	Enhancers	Fetal Lung	lung
30	chr6:36965400-36966800	Enhancers	Small Intestine	intestine
31	chr6:36965400-36966800	Enhancers	Stomach Mucosa	stomach
32	chr6:36965400-36967000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:36965400-36967000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36965400-36967600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:36965400-36967600	Enhancers	Right Ventricle	heart
36	chr6:36965600-36966400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:36965600-36966400	Enhancers	Esophagus	oesophagus
38	chr6:36965600-36966400	Bivalent Enhancer	HepG2	liver
39	chr6:36965600-36966800	Enhancers	Liver	Liver
40	chr6:36965600-36966800	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:36965600-36967000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:36965600-36967000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:36965600-36967000	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:36965600-36968200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:36965800-36966200	Weak transcription	Fetal Thymus	thymus
46	chr6:36965800-36967000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:36965800-36967200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:36966000-36966200	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr6:36966000-36966400	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr6:36966000-36967200	Weak transcription	Fetal Kidney	kidney

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