Variant report

Variant	rs35506005
Chromosome Location	chr3:42679848-42679849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42677644..42680168-chr3:42693244..42695506,2	MCF-7	breast:
2	chr12:89745823..89746379-chr3:42679541..42680340,2	NB4	blood:

Variant related genes	Relation type
ENSG00000139318	Chromatin interaction
ENSG00000114853	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1062051	0.89[ASN][1000 genomes]
rs13072295	0.82[ASN][1000 genomes]
rs13089845	0.81[ASN][1000 genomes]
rs13090902	0.81[ASN][1000 genomes]
rs13093680	0.82[ASN][1000 genomes]
rs17030476	1.00[EUR][1000 genomes]
rs17074662	0.89[ASN][1000 genomes]
rs17074664	0.92[ASN][1000 genomes]
rs17074669	0.92[ASN][1000 genomes]
rs17074673	0.82[ASN][1000 genomes]
rs17074674	0.82[ASN][1000 genomes]
rs17074680	0.92[ASN][1000 genomes]
rs17074693	0.89[ASN][1000 genomes]
rs17074834	1.00[EUR][1000 genomes]
rs17511541	1.00[EUR][1000 genomes]
rs2271182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2284303	0.87[ASN][1000 genomes]
rs2284304	0.82[ASN][1000 genomes]
rs2300057	0.82[ASN][1000 genomes]
rs2300058	0.82[ASN][1000 genomes]
rs2302352	0.82[ASN][1000 genomes]
rs33969824	0.89[ASN][1000 genomes]
rs339700	1.00[EUR][1000 genomes]
rs34683820	0.82[ASN][1000 genomes]
rs34687113	0.89[ASN][1000 genomes]
rs34762478	0.86[ASN][1000 genomes]
rs34801786	0.81[ASN][1000 genomes]
rs34852409	0.82[ASN][1000 genomes]
rs35676838	0.81[ASN][1000 genomes]
rs35770315	0.92[ASN][1000 genomes]
rs35890296	0.82[ASN][1000 genomes]
rs36033201	0.82[ASN][1000 genomes]
rs3774401	0.89[ASN][1000 genomes]
rs3774402	0.89[ASN][1000 genomes]
rs3774404	0.89[ASN][1000 genomes]
rs3774406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774407	0.82[ASN][1000 genomes]
rs3846058	0.89[ASN][1000 genomes]
rs3846059	0.82[ASN][1000 genomes]
rs3856737	0.82[ASN][1000 genomes]
rs3886782	0.84[ASN][1000 genomes]
rs56797870	0.82[ASN][1000 genomes]
rs57259216	0.82[ASN][1000 genomes]
rs58868911	0.82[ASN][1000 genomes]
rs59914338	0.89[ASN][1000 genomes]
rs60348477	0.86[ASN][1000 genomes]
rs61149998	0.89[ASN][1000 genomes]
rs6441928	0.82[ASN][1000 genomes]
rs66786953	0.82[ASN][1000 genomes]
rs67165547	0.82[ASN][1000 genomes]
rs67533173	0.85[ASN][1000 genomes]
rs6772312	0.82[ASN][1000 genomes]
rs6778982	0.82[ASN][1000 genomes]
rs6788548	0.82[ASN][1000 genomes]
rs6793186	0.82[ASN][1000 genomes]
rs6795296	0.82[ASN][1000 genomes]
rs68028490	0.83[ASN][1000 genomes]
rs68071013	0.89[ASN][1000 genomes]
rs72864072	0.82[ASN][1000 genomes]
rs72865703	1.00[EUR][1000 genomes]
rs7617403	0.89[ASN][1000 genomes]
rs7617736	0.89[ASN][1000 genomes]
rs7624628	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002944	chr3:42559762-42728909	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42647200-42688200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr3:42651200-42693000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:42651800-42680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:42656200-42688400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:42658200-42682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:42658200-42693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:42658400-42691400	Strong transcription	Dnd41	blood
8	chr3:42659000-42688000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:42668000-42688200	Strong transcription	Fetal Thymus	thymus
10	chr3:42668400-42692800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr3:42668800-42689200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:42668800-42690200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:42669000-42690600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:42669200-42691800	Strong transcription	Fetal Intestine Large	intestine
15	chr3:42669200-42692200	Strong transcription	Liver	Liver
16	chr3:42669400-42690600	Strong transcription	K562	blood
17	chr3:42669400-42691600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:42669400-42692200	Strong transcription	Fetal Muscle Leg	muscle
19	chr3:42669600-42690000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:42669600-42691000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:42669800-42680600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:42671000-42690800	Strong transcription	Placenta	Placenta
23	chr3:42671200-42681400	Strong transcription	Fetal Brain Male	brain
24	chr3:42671200-42690800	Strong transcription	NHDF-Ad	bronchial
25	chr3:42671200-42691400	Strong transcription	HSMM	muscle
26	chr3:42671200-42691600	Strong transcription	NH-A	brain
27	chr3:42671400-42680400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:42671400-42680600	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:42671400-42682000	Strong transcription	NHEK	skin
30	chr3:42671400-42682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:42671400-42682200	Strong transcription	HUVEC	blood vessel
32	chr3:42671400-42683000	Strong transcription	HSMMtube	muscle
33	chr3:42671400-42687600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:42671400-42689800	Strong transcription	Primary B cells from cord blood	blood
35	chr3:42671400-42690600	Strong transcription	Fetal Lung	lung
36	chr3:42671400-42692200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:42671400-42692200	Strong transcription	Adipose Nuclei	Adipose
38	chr3:42671800-42683000	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr3:42672000-42680000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr3:42672000-42681800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:42672000-42689000	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr3:42672000-42689400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr3:42672000-42690600	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr3:42672000-42691800	Strong transcription	Stomach Smooth Muscle	stomach
45	chr3:42672200-42686400	Strong transcription	Brain Germinal Matrix	brain
46	chr3:42672200-42689000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:42672400-42683000	Strong transcription	Fetal Kidney	kidney
48	chr3:42672600-42692200	Strong transcription	Fetal Brain Female	brain
49	chr3:42673200-42688600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:42673200-42689000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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