The 2.0 version of rSNPBase

Variant report

Variant rs3886782
Chromosome Location chr3:42625580-42625581
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:42624200-42631400 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:42624200-42631600 Weak transcription HSMMtube muscle
3 chr3:42624400-42625600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
4 chr3:42624400-42625600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
5 chr3:42624400-42629800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr3:42624400-42629800 Weak transcription NHEK skin
7 chr3:42624400-42631200 Weak transcription Brain Anterior Caudate brain
8 chr3:42624400-42631200 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr3:42624400-42631200 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr3:42624400-42631400 Weak transcription Liver Liver
11 chr3:42624400-42631400 Weak transcription Brain Angular Gyrus brain
12 chr3:42624400-42631400 Weak transcription Fetal Muscle Leg muscle
13 chr3:42624400-42632400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr3:42624600-42631200 Weak transcription Adipose Nuclei Adipose
15 chr3:42624600-42631400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr3:42624600-42631400 Weak transcription Brain Cingulate Gyrus brain
17 chr3:42624600-42631400 Weak transcription Fetal Brain Male brain
18 chr3:42624600-42631400 Weak transcription A549 lung
19 chr3:42624800-42627000 Weak transcription NHLF lung
20 chr3:42624800-42630200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:42624800-42631400 Weak transcription Primary B cells from cord blood blood
22 chr3:42624800-42631400 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr3:42624800-42631400 Weak transcription Brain Hippocampus Middle brain
24 chr3:42624800-42631400 Weak transcription Duodenum Mucosa Duodenum
25 chr3:42624800-42631400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr3:42624800-42631600 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr3:42624800-42631600 Weak transcription Gastric stomach
28 chr3:42625000-42630200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr3:42625000-42631000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr3:42625000-42631000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr3:42625000-42631200 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr3:42625000-42631200 Weak transcription GM12878-XiMat blood
33 chr3:42625000-42631400 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr3:42625000-42631400 Weak transcription Brain Germinal Matrix brain
35 chr3:42625000-42631400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr3:42625000-42631400 Weak transcription Fetal Intestine Small intestine
37 chr3:42625000-42631600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr3:42625200-42625600 Enhancers iPS-20b Cell Line embryonic stem cell
39 chr3:42625200-42625600 Enhancers Dnd41 blood
40 chr3:42625200-42631400 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr3:42625200-42631600 Weak transcription H9 Cell Line embryonic stem cell
42 chr3:42625400-42626600 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr3:42625400-42631400 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr3:42625400-42631400 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015