Variant report

Variant	rs35513811
Chromosome Location	chr12:41914165-41914166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11609867	1.00[ASN][1000 genomes]
rs11611316	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11614531	1.00[ASN][1000 genomes]
rs11615811	1.00[ASN][1000 genomes]
rs12816326	1.00[ASN][1000 genomes]
rs17591910	1.00[ASN][1000 genomes]
rs17651175	1.00[ASN][1000 genomes]
rs34065803	1.00[ASN][1000 genomes]
rs34548634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34572373	1.00[ASN][1000 genomes]
rs35598170	1.00[AMR][1000 genomes]
rs4768363	1.00[ASN][1000 genomes]
rs55725023	1.00[ASN][1000 genomes]
rs61924341	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61940382	1.00[ASN][1000 genomes]
rs61940385	1.00[ASN][1000 genomes]
rs61940407	1.00[ASN][1000 genomes]
rs73120223	1.00[ASN][1000 genomes]
rs882949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41898600-41915400	Weak transcription	Aorta	Aorta
2	chr12:41902400-41915000	Weak transcription	Brain Anterior Caudate	brain
3	chr12:41904600-41915600	Weak transcription	Fetal Kidney	kidney
4	chr12:41905200-41916400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:41907800-41915400	Weak transcription	Fetal Stomach	stomach
6	chr12:41908000-41915400	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:41908000-41915800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:41908200-41915400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:41908600-41915400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:41908800-41915000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr12:41908800-41915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:41909600-41915400	Weak transcription	Brain Substantia Nigra	brain
13	chr12:41909800-41915400	Weak transcription	Brain Germinal Matrix	brain
14	chr12:41910200-41915600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:41910400-41915000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:41910600-41915600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr12:41914000-41915000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:41914000-41917200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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