Variant report

Variant	rs4768363
Chromosome Location	chr12:42090677-42090678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10161524	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11608265	1.00[ASN][1000 genomes]
rs11609867	1.00[ASN][1000 genomes]
rs11611316	1.00[ASN][1000 genomes]
rs11614531	1.00[ASN][1000 genomes]
rs11615811	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12816326	1.00[ASN][1000 genomes]
rs12822321	1.00[CHB][hapmap]
rs1350434	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17591910	1.00[ASN][1000 genomes]
rs17651175	1.00[ASN][1000 genomes]
rs287008	0.85[GIH][hapmap]
rs34065803	1.00[ASN][1000 genomes]
rs34572373	1.00[ASN][1000 genomes]
rs35513811	1.00[ASN][1000 genomes]
rs3906839	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55725023	1.00[ASN][1000 genomes]
rs61924341	1.00[ASN][1000 genomes]
rs61939290	0.83[AFR][1000 genomes]
rs61939329	1.00[ASN][1000 genomes]
rs61939354	1.00[ASN][1000 genomes]
rs61940382	1.00[ASN][1000 genomes]
rs61940385	1.00[ASN][1000 genomes]
rs61940407	1.00[ASN][1000 genomes]
rs73120223	1.00[ASN][1000 genomes]
rs882949	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42090200-42091600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:42090400-42091400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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