Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11608265	1.00[ASN][1000 genomes]
rs11609867	1.00[ASN][1000 genomes]
rs11611316	1.00[ASN][1000 genomes]
rs11614531	1.00[ASN][1000 genomes]
rs11615811	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12816326	1.00[ASN][1000 genomes]
rs12822321	1.00[CHB][hapmap]
rs1350434	1.00[CHB][hapmap]
rs17591910	1.00[ASN][1000 genomes]
rs17651175	1.00[ASN][1000 genomes]
rs34065803	1.00[ASN][1000 genomes]
rs34572373	1.00[ASN][1000 genomes]
rs3906839	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768363	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55725023	1.00[ASN][1000 genomes]
rs61924341	1.00[ASN][1000 genomes]
rs61939329	1.00[ASN][1000 genomes]
rs61939354	1.00[ASN][1000 genomes]
rs61940382	1.00[ASN][1000 genomes]
rs61940385	1.00[ASN][1000 genomes]
rs61940407	1.00[ASN][1000 genomes]
rs73120223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42101800-42104000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr12:42101800-42104200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:42101800-42104200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:42101800-42104800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:42102000-42103200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:42102000-42103600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:42102000-42104200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:42102200-42103600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:42102200-42103800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:42102400-42102800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:42102400-42102800	Enhancers	A549	lung
12	chr12:42102400-42103000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:42102400-42103000	Enhancers	Fetal Kidney	kidney
14	chr12:42102600-42103000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr12:42102600-42103000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:42102600-42103800	Enhancers	Brain Germinal Matrix	brain
17	chr12:42102600-42104200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:42102600-42104200	Enhancers	Fetal Lung	lung

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