Variant report

Variant	rs11608265
Chromosome Location	chr12:42155441-42155442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10161524	1.00[ASN][1000 genomes]
rs11609867	1.00[ASN][1000 genomes]
rs11611316	1.00[ASN][1000 genomes]
rs11614531	1.00[ASN][1000 genomes]
rs12816326	1.00[ASN][1000 genomes]
rs17591910	1.00[ASN][1000 genomes]
rs17651175	1.00[ASN][1000 genomes]
rs34065803	1.00[ASN][1000 genomes]
rs34572373	1.00[ASN][1000 genomes]
rs3906839	1.00[ASN][1000 genomes]
rs4768363	1.00[ASN][1000 genomes]
rs55725023	1.00[ASN][1000 genomes]
rs61924341	1.00[ASN][1000 genomes]
rs61939329	1.00[ASN][1000 genomes]
rs61939354	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61940382	1.00[ASN][1000 genomes]
rs61940385	1.00[ASN][1000 genomes]
rs61940407	1.00[ASN][1000 genomes]
rs73120223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42151000-42158000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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