Variant report

Variant	rs35529982
Chromosome Location	chr4:54968367-54968368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54967560..54969215-chr4:55017035..55019730,2	K562	blood:
2	chr4:54966084..54968498-chr4:54968560..54970883,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221219	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12500475	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501838	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13114613	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142462	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372785	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35638196	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35818763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41386153	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6554148	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6811249	0.80[AMR][1000 genomes]
rs6817230	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6842144	0.81[ASN][1000 genomes]
rs6850083	0.92[ASN][1000 genomes]
rs7695934	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv594202	chr4:54943432-55011123	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594203	chr4:54960005-55030375	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54965600-54968400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
2	chr4:54966000-54970400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr4:54966600-54968800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:54967000-54968400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
5	chr4:54967200-54968400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
6	chr4:54967400-54970800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:54967600-54969800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:54967800-54968600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:54967800-54968600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
10	chr4:54967800-54969400	Weak transcription	Right Atrium	heart
11	chr4:54968000-54968400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
12	chr4:54968000-54968400	Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr4:54968000-54968600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:54968000-54969400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr4:54968000-54969400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr4:54968000-54969600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr4:54968000-54970400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
18	chr4:54968200-54968400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
19	chr4:54968200-54968400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr4:54968200-54968400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:54968200-54969400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
22	chr4:54968200-54969600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
23	chr4:54968200-54969800	Weak transcription	Pancreas	Pancrea

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