Variant report

Variant	rs6850083
Chromosome Location	chr4:54986912-54986913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1017280	0.97[EUR][1000 genomes]
rs11725470	0.97[EUR][1000 genomes]
rs12500475	0.92[ASN][1000 genomes]
rs12506808	0.90[EUR][1000 genomes]
rs12507253	0.95[EUR][1000 genomes]
rs12510014	0.85[EUR][1000 genomes]
rs12512002	0.95[EUR][1000 genomes]
rs12648383	0.96[EUR][1000 genomes]
rs13112338	0.85[EUR][1000 genomes]
rs13114613	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs13131948	0.94[EUR][1000 genomes]
rs13142462	0.92[ASN][1000 genomes]
rs13148062	0.97[EUR][1000 genomes]
rs1364989	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs34372785	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34797391	0.85[EUR][1000 genomes]
rs35422368	0.85[EUR][1000 genomes]
rs35511042	0.97[EUR][1000 genomes]
rs35529982	0.92[ASN][1000 genomes]
rs35638196	0.87[GIH][hapmap];0.82[MEX][hapmap]
rs35818763	0.92[ASN][1000 genomes]
rs36035401	0.82[EUR][1000 genomes]
rs41386153	0.93[GIH][hapmap];0.82[MEX][hapmap]
rs4864853	0.93[EUR][1000 genomes]
rs6554148	0.87[GIH][hapmap];0.82[MEX][hapmap]
rs6811249	0.93[EUR][1000 genomes]
rs6817230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842144	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6842584	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs71597863	0.95[EUR][1000 genomes]
rs71597864	0.87[EUR][1000 genomes]
rs71597865	0.85[EUR][1000 genomes]
rs7659453	0.85[EUR][1000 genomes]
rs7667373	0.96[EUR][1000 genomes]
rs7676108	0.85[EUR][1000 genomes]
rs7677077	0.85[EUR][1000 genomes]
rs7677087	0.85[EUR][1000 genomes]
rs7695934	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929967	0.82[EUR][1000 genomes]
rs929968	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv594202	chr4:54943432-55011123	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594203	chr4:54960005-55030375	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv879020	chr4:54986912-55064573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54984800-54987600	Enhancers	Fetal Intestine Large	intestine
2	chr4:54985400-54987800	Enhancers	Fetal Intestine Small	intestine

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