Variant report

Variant	rs6842144
Chromosome Location	chr4:54991548-54991549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1017280	0.96[EUR][1000 genomes]
rs11725470	0.96[EUR][1000 genomes]
rs12500475	0.81[ASN][1000 genomes]
rs12506808	0.90[EUR][1000 genomes]
rs12507253	0.95[EUR][1000 genomes]
rs12510014	0.84[EUR][1000 genomes]
rs12512002	0.94[EUR][1000 genomes]
rs12648383	0.95[EUR][1000 genomes]
rs13112338	0.84[EUR][1000 genomes]
rs13114613	0.81[ASN][1000 genomes]
rs13131948	0.93[EUR][1000 genomes]
rs13142462	0.81[ASN][1000 genomes]
rs13148062	0.96[EUR][1000 genomes]
rs1364989	0.95[EUR][1000 genomes]
rs34372785	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34797391	0.84[EUR][1000 genomes]
rs35422368	0.84[EUR][1000 genomes]
rs35511042	0.96[EUR][1000 genomes]
rs35529982	0.81[ASN][1000 genomes]
rs35818763	0.81[ASN][1000 genomes]
rs36035401	0.82[EUR][1000 genomes]
rs4864853	0.92[EUR][1000 genomes]
rs6811249	0.92[EUR][1000 genomes]
rs6817230	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850083	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71597863	0.95[EUR][1000 genomes]
rs71597864	0.87[EUR][1000 genomes]
rs71597865	0.84[EUR][1000 genomes]
rs7659453	0.84[EUR][1000 genomes]
rs7667373	0.95[EUR][1000 genomes]
rs7676108	0.84[EUR][1000 genomes]
rs7677077	0.84[EUR][1000 genomes]
rs7677087	0.84[EUR][1000 genomes]
rs7695934	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs929967	0.82[EUR][1000 genomes]
rs929968	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv594202	chr4:54943432-55011123	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv594203	chr4:54960005-55030375	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv879020	chr4:54986912-55064573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54991200-54991600	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links