Variant report

Variant	rs35532322
Chromosome Location	chr7:147687645-147687646
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147680486..147683075-chr7:147685305..147687818,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10264127	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10279570	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10500195	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952724	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12055952	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12532921	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12537012	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12539260	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12667799	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12674208	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16883782	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17170795	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17170796	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2373285	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2710076	0.93[ASN][1000 genomes]
rs34395632	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34607423	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36041215	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4726915	0.85[AMR][1000 genomes]
rs57995398	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs715183	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs757695	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9640249	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9640250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv523350	chr7:147687165-147687881	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147685600-147688400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:147687200-147696000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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