Variant report

Variant	rs35538776
Chromosome Location	chr15:43083514-43083515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1058846	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12902830	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12905385	0.82[MEX][hapmap]
rs12908349	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910799	1.00[ASN][1000 genomes]
rs12911334	1.00[ASN][1000 genomes]
rs12911585	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12914380	1.00[ASN][1000 genomes]
rs12915116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs17774047	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2136899	0.84[CEU][hapmap];0.91[MEX][hapmap]
rs2175370	0.84[CEU][hapmap]
rs34474101	0.81[EUR][1000 genomes]
rs34745458	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34920950	0.87[EUR][1000 genomes]
rs35088691	1.00[ASN][1000 genomes]
rs35202249	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298309	1.00[ASN][1000 genomes]
rs35326878	1.00[ASN][1000 genomes]
rs35392023	1.00[ASN][1000 genomes]
rs36092914	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742993	0.84[CEU][hapmap];0.82[MEX][hapmap]
rs4545789	0.84[CEU][hapmap]
rs4923954	1.00[ASN][1000 genomes]
rs4924692	0.84[CEU][hapmap]
rs4924694	0.83[CEU][hapmap];0.91[MEX][hapmap]
rs4924699	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs61122145	1.00[ASN][1000 genomes]
rs66932813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672054	0.84[CEU][hapmap]
rs7166373	0.84[CEU][hapmap]
rs7175582	0.85[CEU][hapmap]
rs7182141	0.85[CEU][hapmap]
rs72713784	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713795	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719486	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721511	1.00[ASN][1000 genomes]
rs8024902	0.84[CEU][hapmap]
rs8031218	0.91[MEX][hapmap]
rs8037613	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039711	0.84[CEU][hapmap]
rs8039765	0.84[CEU][hapmap];0.91[MEX][hapmap]
rs938047	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35538776	CDAN1	cis	parietal	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
2	chr15:43051800-43083800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:43053600-43112200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:43056800-43116800	Weak transcription	HepG2	liver
6	chr15:43057600-43107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:43060800-43122200	Weak transcription	GM12878-XiMat	blood
8	chr15:43062600-43087800	Weak transcription	K562	blood
9	chr15:43062800-43088600	Weak transcription	NHDF-Ad	bronchial
10	chr15:43063000-43093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:43063400-43093600	Weak transcription	Esophagus	oesophagus
12	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
13	chr15:43064000-43114200	Weak transcription	Fetal Kidney	kidney
14	chr15:43064800-43150800	Weak transcription	HSMM	muscle
15	chr15:43066400-43095600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:43066600-43088600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:43066600-43097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:43067600-43092800	Weak transcription	Brain Germinal Matrix	brain
20	chr15:43067800-43093000	Weak transcription	Fetal Brain Female	brain
21	chr15:43067800-43095200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:43068000-43093000	Weak transcription	Spleen	Spleen
23	chr15:43068400-43089200	Weak transcription	HUVEC	blood vessel
24	chr15:43068400-43093000	Weak transcription	Aorta	Aorta
25	chr15:43068400-43093600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:43068800-43089600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:43068800-43092600	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:43069000-43086400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:43069000-43092800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:43069000-43093400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:43075200-43092600	Weak transcription	Fetal Heart	heart
32	chr15:43075200-43093600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
35	chr15:43075600-43084800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:43075600-43084800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:43075600-43085000	Weak transcription	Brain Angular Gyrus	brain
38	chr15:43075600-43086400	Weak transcription	Brain Anterior Caudate	brain
39	chr15:43075600-43086400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:43075600-43088600	Weak transcription	NHEK	skin
41	chr15:43075600-43093000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:43075600-43093400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:43075600-43093600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:43075600-43093600	Weak transcription	Fetal Lung	lung
45	chr15:43075600-43093600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:43075800-43083600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:43075800-43083800	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:43075800-43083800	Weak transcription	Fetal Stomach	stomach
50	chr15:43075800-43084600	Weak transcription	Stomach Smooth Muscle	stomach

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