Variant report

Variant	rs66932813
Chromosome Location	chr15:43088622-43088623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43071141..43072690-chr15:43088507..43091296,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1058846	1.00[ASN][1000 genomes]
rs12902830	1.00[ASN][1000 genomes]
rs12908349	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910799	1.00[ASN][1000 genomes]
rs12911334	1.00[ASN][1000 genomes]
rs12911585	1.00[ASN][1000 genomes]
rs12913618	0.80[AFR][1000 genomes]
rs12914380	1.00[ASN][1000 genomes]
rs12915116	1.00[ASN][1000 genomes]
rs17774047	1.00[ASN][1000 genomes]
rs34474101	0.82[EUR][1000 genomes]
rs34745458	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34920950	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35088691	1.00[ASN][1000 genomes]
rs35202249	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298309	1.00[ASN][1000 genomes]
rs35326878	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35392023	1.00[ASN][1000 genomes]
rs35538776	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36092914	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923954	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4924699	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61122145	1.00[ASN][1000 genomes]
rs72713784	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713795	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719486	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721511	1.00[ASN][1000 genomes]
rs8037613	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
2	chr15:43053600-43112200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:43056800-43116800	Weak transcription	HepG2	liver
5	chr15:43057600-43107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:43060800-43122200	Weak transcription	GM12878-XiMat	blood
7	chr15:43063000-43093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:43063400-43093600	Weak transcription	Esophagus	oesophagus
9	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
10	chr15:43064000-43114200	Weak transcription	Fetal Kidney	kidney
11	chr15:43064800-43150800	Weak transcription	HSMM	muscle
12	chr15:43066400-43095600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:43066600-43097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:43067600-43092800	Weak transcription	Brain Germinal Matrix	brain
16	chr15:43067800-43093000	Weak transcription	Fetal Brain Female	brain
17	chr15:43067800-43095200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:43068000-43093000	Weak transcription	Spleen	Spleen
19	chr15:43068400-43089200	Weak transcription	HUVEC	blood vessel
20	chr15:43068400-43093000	Weak transcription	Aorta	Aorta
21	chr15:43068400-43093600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:43068800-43089600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:43068800-43092600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:43069000-43092800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:43069000-43093400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:43075200-43092600	Weak transcription	Fetal Heart	heart
27	chr15:43075200-43093600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
30	chr15:43075600-43093000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:43075600-43093400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:43075600-43093600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:43075600-43093600	Weak transcription	Fetal Lung	lung
34	chr15:43075600-43093600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:43075800-43089400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:43075800-43092600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:43075800-43093000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:43075800-43093000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:43075800-43093000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:43075800-43093000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:43075800-43093000	Weak transcription	Left Ventricle	heart
43	chr15:43075800-43093000	Weak transcription	Lung	lung
44	chr15:43075800-43093000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:43075800-43093200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:43075800-43093200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:43075800-43093200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:43075800-43093200	Weak transcription	Right Ventricle	heart
49	chr15:43075800-43093200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:43075800-43093400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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