Variant report

Variant	rs34745458
Chromosome Location	chr15:43137201-43137202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1058846	1.00[ASN][1000 genomes]
rs12902830	1.00[ASN][1000 genomes]
rs12908349	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910799	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911334	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12911585	1.00[ASN][1000 genomes]
rs12914380	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915116	1.00[ASN][1000 genomes]
rs17720657	1.00[ASN][1000 genomes]
rs17774047	1.00[ASN][1000 genomes]
rs34474101	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34920950	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35088691	1.00[ASN][1000 genomes]
rs35202249	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298309	1.00[ASN][1000 genomes]
rs35326878	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35392023	1.00[ASN][1000 genomes]
rs35538776	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35900502	1.00[ASN][1000 genomes]
rs36092914	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923954	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924699	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61122145	1.00[ASN][1000 genomes]
rs66932813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713784	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713795	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719486	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72721511	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037613	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	esv3400306	chr15:43135709-43164903	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:43064800-43150800	Weak transcription	HSMM	muscle
3	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:43089800-43165200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:43094400-43163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:43094600-43150800	Weak transcription	Aorta	Aorta
10	chr15:43095000-43165000	Weak transcription	Spleen	Spleen
11	chr15:43095800-43139000	Weak transcription	Esophagus	oesophagus
12	chr15:43103000-43165400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:43103200-43138400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:43103400-43173200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:43106200-43142000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:43112600-43138000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:43114800-43172000	Weak transcription	Pancreas	Pancrea
18	chr15:43118200-43139200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:43118400-43144400	Weak transcription	Gastric	stomach
20	chr15:43119600-43168200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:43119600-43172600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:43119800-43163200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:43119800-43170200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:43120000-43142000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:43120000-43151000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:43120600-43141800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:43125200-43151400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:43125400-43173600	Weak transcription	Hela-S3	cervix
29	chr15:43126000-43150600	Weak transcription	HMEC	breast
30	chr15:43131000-43165200	Weak transcription	Thymus	Thymus
31	chr15:43131600-43171800	Weak transcription	Brain Anterior Caudate	brain
32	chr15:43131800-43150800	Weak transcription	Fetal Heart	heart
33	chr15:43132000-43186800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:43132200-43137800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:43132200-43142000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:43132200-43150000	Weak transcription	Placenta	Placenta
37	chr15:43132200-43150800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:43132200-43155600	Weak transcription	Liver	Liver
39	chr15:43132200-43162400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:43132200-43166200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:43132400-43138400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:43132400-43142000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:43132400-43145000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:43132400-43151600	Weak transcription	Brain Angular Gyrus	brain
45	chr15:43132400-43165400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:43132400-43172800	Weak transcription	Ovary	ovary
47	chr15:43132600-43171200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:43135000-43141800	Weak transcription	Primary T cells from cord blood	blood
49	chr15:43135200-43137600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:43136200-43137600	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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