Variant report

Variant	rs35599608
Chromosome Location	chr11:18800389-18800390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12792107	1.00[EUR][1000 genomes]
rs12801384	1.00[EUR][1000 genomes]
rs34083716	1.00[EUR][1000 genomes]
rs34169037	0.82[EUR][1000 genomes]
rs36002598	1.00[EUR][1000 genomes]
rs6483525	0.82[EUR][1000 genomes]
rs71486879	1.00[EUR][1000 genomes]
rs7932701	1.00[EUR][1000 genomes]
rs7932876	1.00[EUR][1000 genomes]
rs7932996	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18783000-18801800	Weak transcription	Spleen	Spleen
2	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
3	chr11:18790800-18811400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:18793600-18809000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:18794600-18811800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:18795200-18801400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:18795400-18801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:18795400-18804600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:18796000-18800400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:18796000-18800600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:18796000-18802000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:18796400-18812400	Weak transcription	Right Atrium	heart
13	chr11:18800000-18802400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:18800200-18800600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:18800200-18800800	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links