Variant report

Variant	rs6483525
Chromosome Location	chr11:18795614-18795615
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12792107	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12801384	0.82[EUR][1000 genomes]
rs34083716	0.82[EUR][1000 genomes]
rs34169037	1.00[EUR][1000 genomes]
rs35599608	0.82[EUR][1000 genomes]
rs36002598	0.82[EUR][1000 genomes]
rs4075663	0.91[YRI][hapmap]
rs71486879	0.82[EUR][1000 genomes]
rs7932701	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7932876	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7932996	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18783000-18801800	Weak transcription	Spleen	Spleen
2	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
3	chr11:18790800-18811400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:18793600-18809000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:18793800-18796000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:18794000-18796200	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:18794400-18796000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:18794600-18811800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:18795200-18801400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:18795400-18801400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:18795400-18804600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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