Variant report

Variant	rs35606458
Chromosome Location	chr3:121400172-121400173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12498138	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1919550	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv999335	chr3:121100283-121408766	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121379400-121402400	Strong transcription	Fetal Intestine Large	intestine
2	chr3:121380000-121402600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:121380400-121402400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:121380400-121402800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:121380400-121406600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:121380600-121413800	Weak transcription	Stomach Mucosa	stomach
7	chr3:121381000-121401800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:121381000-121403200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:121381400-121406800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr3:121381600-121401600	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr3:121381600-121402200	Strong transcription	Placenta	Placenta
12	chr3:121381600-121402400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:121381600-121402400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:121381600-121402600	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr3:121381600-121402800	Strong transcription	Liver	Liver
16	chr3:121381800-121401200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:121381800-121402600	Strong transcription	Primary T cells from cord blood	blood
18	chr3:121382000-121401800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:121382200-121401600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:121382400-121401800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:121382600-121401600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:121382800-121402600	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:121383000-121400200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:121384200-121402600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:121386600-121447200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:121390200-121402000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:121390200-121402400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:121390400-121402400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:121390800-121403400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:121391200-121400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:121391400-121400200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:121391800-121402600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:121392400-121401200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:121392800-121401400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:121392800-121401600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:121392800-121401600	Strong transcription	Primary B cells from cord blood	blood
37	chr3:121392800-121401800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr3:121393000-121401800	Strong transcription	HSMM	muscle
39	chr3:121393400-121401800	Strong transcription	GM12878-XiMat	blood
40	chr3:121394200-121400800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr3:121394600-121402200	Strong transcription	HSMMtube	muscle
42	chr3:121396000-121409600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr3:121396200-121408600	Weak transcription	HUVEC	blood vessel
44	chr3:121396800-121435600	Weak transcription	Psoas Muscle	Psoas
45	chr3:121397200-121401000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:121397400-121401400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:121397400-121401600	Strong transcription	Fetal Thymus	thymus
48	chr3:121397600-121402200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:121397600-121402600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:121397600-121402600	Strong transcription	Stomach Smooth Muscle	stomach

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