Variant report

Variant	rs35619286
Chromosome Location	chr5:80444717-80444718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13155998	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17213955	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34207428	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064391	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35673979	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830360	chr5:80283278-80446040	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80410600-80446600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:80423000-80451400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:80424400-80445000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:80436800-80448600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:80437400-80447000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:80438800-80445800	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:80438800-80446600	Weak transcription	Fetal Stomach	stomach
8	chr5:80441800-80446600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:80442200-80460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:80442200-80465600	Weak transcription	HepG2	liver
11	chr5:80444000-80451400	Weak transcription	Ovary	ovary
12	chr5:80444000-80457000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:80444400-80445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:80444400-80445800	Weak transcription	Primary T cells from cord blood	blood
15	chr5:80444400-80448400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:80444400-80448600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:80444400-80449200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:80444400-80451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:80444400-80451200	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:80444400-80451400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:80444400-80451400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:80444600-80445200	Enhancers	Dnd41	blood

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