Variant report

Variant	rs35673979
Chromosome Location	chr5:80447363-80447364
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13155998	1.00[ASN][1000 genomes]
rs17213955	1.00[ASN][1000 genomes]
rs34207428	1.00[ASN][1000 genomes]
rs35064391	1.00[ASN][1000 genomes]
rs35619286	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80423000-80451400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:80436800-80448600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:80442200-80460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:80442200-80465600	Weak transcription	HepG2	liver
5	chr5:80444000-80451400	Weak transcription	Ovary	ovary
6	chr5:80444000-80457000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:80444400-80448400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:80444400-80448600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:80444400-80449200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:80444400-80451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:80444400-80451200	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:80444400-80451400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:80444400-80451400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:80445800-80447600	Enhancers	Fetal Muscle Leg	muscle
15	chr5:80445800-80448800	Strong transcription	Primary T cells from cord blood	blood
16	chr5:80446200-80451600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:80446200-80466000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:80446600-80447600	Enhancers	Fetal Stomach	stomach
19	chr5:80447000-80447400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:80447000-80447600	Enhancers	Fetal Lung	lung
21	chr5:80447200-80448000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links