Variant report

Variant	rs35655170
Chromosome Location	chr8:50066463-50066464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10092709	0.83[ASN][1000 genomes]
rs10097641	0.83[ASN][1000 genomes]
rs1021036	0.83[ASN][1000 genomes]
rs10504077	0.82[ASN][1000 genomes]
rs10808750	0.85[ASN][1000 genomes]
rs10957383	0.83[ASN][1000 genomes]
rs10957385	0.85[ASN][1000 genomes]
rs11777050	0.83[ASN][1000 genomes]
rs11986211	0.83[ASN][1000 genomes]
rs11998708	0.81[ASN][1000 genomes]
rs13263230	0.84[ASN][1000 genomes]
rs1613684	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1617791	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1842400	0.83[ASN][1000 genomes]
rs1876720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2175033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2219896	0.80[ASN][1000 genomes]
rs2385328	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2385330	0.83[ASN][1000 genomes]
rs2385331	0.83[ASN][1000 genomes]
rs2726711	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2726714	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35395861	0.83[ASN][1000 genomes]
rs4256605	0.85[ASN][1000 genomes]
rs4461912	0.81[ASN][1000 genomes]
rs4501593	0.83[ASN][1000 genomes]
rs4873325	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873347	0.81[ASN][1000 genomes]
rs4873348	0.84[ASN][1000 genomes]
rs4873349	0.80[ASN][1000 genomes]
rs55987135	0.81[ASN][1000 genomes]
rs62508747	0.83[ASN][1000 genomes]
rs6472291	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6982179	0.83[ASN][1000 genomes]
rs6988643	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6999524	0.83[ASN][1000 genomes]
rs7006071	0.81[ASN][1000 genomes]
rs7012516	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7818564	0.83[ASN][1000 genomes]
rs7824009	0.80[ASN][1000 genomes]
rs7828104	0.83[ASN][1000 genomes]
rs7833419	0.83[ASN][1000 genomes]
rs7836969	0.83[ASN][1000 genomes]
rs7840704	0.80[ASN][1000 genomes]
rs7841358	0.80[ASN][1000 genomes]
rs7844505	0.84[ASN][1000 genomes]
rs7845374	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50066000-50069000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links