Variant report

Variant	rs7836969
Chromosome Location	chr8:50155138-50155139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50154056..50156142-chr8:50160235..50163146,3	K562	blood:
2	chr8:50154600..50156142-chr8:50160235..50163146,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10092709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097641	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021036	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504077	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808750	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957385	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777050	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986211	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994922	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11998708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12541915	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12547293	0.82[AMR][1000 genomes]
rs13263230	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383272	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1480385	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1613684	0.86[ASN][1000 genomes]
rs1617791	0.84[ASN][1000 genomes]
rs16906121	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1842400	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876720	0.86[ASN][1000 genomes]
rs2175033	0.86[ASN][1000 genomes]
rs2219896	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2385328	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2385330	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385331	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726710	0.91[JPT][hapmap]
rs2726711	0.86[ASN][1000 genomes]
rs2726714	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34893562	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35395861	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35655170	0.83[ASN][1000 genomes]
rs4256605	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4461912	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4501593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873325	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873347	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873348	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873349	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55987135	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62508747	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6472291	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982179	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988643	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6999524	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7006071	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7012516	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015183	0.80[ASN][1000 genomes]
rs7818564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824009	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828104	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840704	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841358	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844505	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7845374	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890856	chr8:50133485-50272497	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7836969	HCK	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50139200-50159400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:50152600-50158000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links