Variant report

Variant	rs7840704
Chromosome Location	chr8:50206111-50206112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50174406..50177036-chr8:50205443..50207064,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10092709	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10097641	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1021036	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504077	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808750	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957383	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957385	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11777050	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11986211	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11994922	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11998708	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12546213	0.82[AMR][1000 genomes]
rs13258781	0.80[AMR][1000 genomes]
rs13263230	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13263971	0.80[AMR][1000 genomes]
rs13272410	0.80[AMR][1000 genomes]
rs1383272	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1480386	0.80[AMR][1000 genomes]
rs1613684	0.84[ASN][1000 genomes]
rs1617791	0.82[ASN][1000 genomes]
rs16906585	0.82[AMR][1000 genomes]
rs1842400	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1876720	0.84[ASN][1000 genomes]
rs2175033	0.84[ASN][1000 genomes]
rs2219896	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2385328	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385330	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2385331	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2726711	0.84[ASN][1000 genomes]
rs2726714	0.84[ASN][1000 genomes]
rs35141848	0.80[AMR][1000 genomes]
rs35395861	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35655170	0.80[ASN][1000 genomes]
rs4256605	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4461912	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4501593	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4506233	0.83[AMR][1000 genomes]
rs4873325	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873347	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873348	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55987135	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62508747	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472291	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6982179	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988643	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6999524	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006071	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7012516	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7818564	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828104	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7833419	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836969	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841358	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844505	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845374	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890856	chr8:50133485-50272497	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50204600-50207000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:50204800-50206400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:50204800-50207200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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