Variant report

Variant	rs35687554
Chromosome Location	chr8:61745056-61745057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61739971..61741580-chr8:61744602..61746196,2	K562	blood:
2	chr8:61744951..61747188-chr8:61749235..61750993,2	K562	blood:
3	chr8:61739971..61742969-chr8:61743968..61746196,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1038353	0.81[AMR][1000 genomes]
rs10957159	0.85[ASN][1000 genomes]
rs10957160	0.85[ASN][1000 genomes]
rs13255052	0.83[ASN][1000 genomes]
rs13278198	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2326597	0.84[AMR][1000 genomes]
rs35149496	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35254359	0.83[AMR][1000 genomes]
rs6471900	0.83[ASN][1000 genomes]
rs6471904	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67670110	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6987611	0.87[ASN][1000 genomes]
rs6988835	0.85[ASN][1000 genomes]
rs6989150	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6994642	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7823926	0.87[ASN][1000 genomes]
rs7833957	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7846314	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61705800-61755000	Weak transcription	Psoas Muscle	Psoas
2	chr8:61718200-61749400	Weak transcription	Fetal Kidney	kidney
3	chr8:61718800-61781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:61720800-61752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:61726800-61749600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:61728200-61749000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:61728800-61749400	Weak transcription	Small Intestine	intestine
8	chr8:61729200-61751600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:61731800-61751400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:61732000-61752000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:61733200-61750800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:61736400-61746200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:61736400-61746400	Strong transcription	Dnd41	blood
14	chr8:61736400-61752600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:61737400-61747400	Weak transcription	Fetal Brain Male	brain
16	chr8:61737800-61760800	Weak transcription	Stomach Mucosa	stomach
17	chr8:61738200-61746200	Strong transcription	HepG2	liver
18	chr8:61739000-61746200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:61739400-61755400	Weak transcription	Esophagus	oesophagus
20	chr8:61740400-61780200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:61740600-61745600	Strong transcription	Fetal Muscle Leg	muscle
22	chr8:61740600-61765000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr8:61740800-61746400	Strong transcription	Primary B cells from cord blood	blood
24	chr8:61740800-61746400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr8:61741000-61745600	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:61741000-61745800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr8:61741000-61746400	Strong transcription	Fetal Intestine Large	intestine
28	chr8:61741000-61748400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:61741000-61750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:61741200-61745600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:61741200-61745600	Strong transcription	Liver	Liver
32	chr8:61741200-61746400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr8:61741200-61746400	Strong transcription	HSMM	muscle
34	chr8:61741200-61750000	Weak transcription	Brain Angular Gyrus	brain
35	chr8:61741200-61760200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr8:61741200-61763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:61741200-61770600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:61741400-61746000	Strong transcription	NHEK	skin
39	chr8:61741400-61746400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:61741400-61748800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr8:61741400-61751800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr8:61741400-61752600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr8:61741400-61761800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr8:61741400-61762200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:61741400-61764600	Weak transcription	Osteobl	bone
46	chr8:61741600-61745600	Strong transcription	Left Ventricle	heart
47	chr8:61741600-61746400	Strong transcription	GM12878-XiMat	blood
48	chr8:61741600-61748800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr8:61741600-61762400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr8:61741800-61751200	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links