Variant report

Variant	rs6471900
Chromosome Location	chr8:61693152-61693153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61684289..61686170-chr8:61692198..61694163,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10088263	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1038353	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10957159	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11775560	0.92[ASN][1000 genomes]
rs12056700	0.91[ASN][1000 genomes]
rs13255052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278198	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326597	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34022185	0.91[ASN][1000 genomes]
rs34345692	0.91[ASN][1000 genomes]
rs35149496	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35254359	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35687554	0.83[ASN][1000 genomes]
rs35914442	0.91[ASN][1000 genomes]
rs6471904	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67670110	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6987611	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988835	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989150	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6994642	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7460516	0.91[ASN][1000 genomes]
rs7823926	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7833957	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7840098	0.88[YRI][hapmap]
rs7846314	0.93[ASN][1000 genomes]
rs9298041	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61672000-61694400	Weak transcription	A549	lung
2	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
3	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
4	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:61680200-61694800	Weak transcription	Lung	lung
6	chr8:61680200-61694800	Weak transcription	K562	blood
7	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
10	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
11	chr8:61680400-61694600	Weak transcription	Placenta	Placenta
12	chr8:61681000-61694400	Weak transcription	HSMMtube	muscle
13	chr8:61681200-61693600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:61681200-61693600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:61681200-61694800	Weak transcription	Gastric	stomach
16	chr8:61681200-61696200	Weak transcription	Right Ventricle	heart
17	chr8:61681200-61698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:61681200-61700400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:61681200-61705200	Weak transcription	Spleen	Spleen
20	chr8:61681400-61693600	Weak transcription	Dnd41	blood
21	chr8:61682200-61705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:61682600-61694800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:61683400-61694000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:61683600-61711200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:61683800-61693800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:61683800-61695800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:61685200-61704200	Weak transcription	Small Intestine	intestine
28	chr8:61686000-61698600	Weak transcription	Fetal Intestine Small	intestine
29	chr8:61686200-61693600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr8:61686200-61693600	Weak transcription	HSMM	muscle
31	chr8:61686200-61694400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:61686200-61694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr8:61686200-61694800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:61686800-61693600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:61686800-61694800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:61687000-61693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:61687000-61694800	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:61687200-61693600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr8:61687200-61694000	Weak transcription	Fetal Thymus	thymus
40	chr8:61687200-61704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:61687200-61704200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:61687200-61720400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:61687400-61694600	Weak transcription	Fetal Stomach	stomach
44	chr8:61687400-61694800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr8:61687400-61704400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr8:61688800-61693200	Enhancers	Primary T cells from cord blood	blood
47	chr8:61688800-61693400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr8:61688800-61719600	Weak transcription	NHEK	skin
49	chr8:61689200-61693400	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr8:61689200-61693600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links