Variant report

Variant	rs9298041
Chromosome Location	chr8:61687075-61687076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61674992..61676509-chr8:61685123..61687437,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1038353	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10957159	0.84[ASN][1000 genomes]
rs10957160	0.84[ASN][1000 genomes]
rs11775560	0.83[ASN][1000 genomes]
rs12056700	0.82[ASN][1000 genomes]
rs13255052	0.86[ASN][1000 genomes]
rs13256023	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs13278198	0.84[ASN][1000 genomes]
rs2326597	0.83[ASN][1000 genomes]
rs34022185	0.82[ASN][1000 genomes]
rs34345692	0.82[ASN][1000 genomes]
rs35149496	0.84[ASN][1000 genomes]
rs35254359	0.86[ASN][1000 genomes]
rs35914442	0.82[ASN][1000 genomes]
rs6471900	0.86[ASN][1000 genomes]
rs6987611	0.82[ASN][1000 genomes]
rs6988835	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs6989150	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6994642	0.92[JPT][hapmap]
rs7460516	0.82[ASN][1000 genomes]
rs7823926	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7833957	0.84[ASN][1000 genomes]
rs7846314	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61657000-61690400	Weak transcription	HepG2	liver
2	chr8:61672000-61694400	Weak transcription	A549	lung
3	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
4	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
5	chr8:61677000-61691800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:61678000-61687600	Enhancers	Primary B cells from peripheral blood	blood
7	chr8:61678400-61687400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr8:61678400-61687600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:61678800-61687600	Enhancers	Brain Germinal Matrix	brain
10	chr8:61679600-61687200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:61679600-61688200	Enhancers	Fetal Lung	lung
12	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:61680200-61694800	Weak transcription	Lung	lung
14	chr8:61680200-61694800	Weak transcription	K562	blood
15	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
18	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
19	chr8:61680400-61689400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:61680400-61694600	Weak transcription	Placenta	Placenta
21	chr8:61681000-61694400	Weak transcription	HSMMtube	muscle
22	chr8:61681200-61693600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:61681200-61693600	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:61681200-61694800	Weak transcription	Gastric	stomach
25	chr8:61681200-61696200	Weak transcription	Right Ventricle	heart
26	chr8:61681200-61698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:61681200-61700400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:61681200-61705200	Weak transcription	Spleen	Spleen
29	chr8:61681400-61693600	Weak transcription	Dnd41	blood
30	chr8:61682200-61705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr8:61682600-61688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr8:61682600-61690800	Weak transcription	Stomach Mucosa	stomach
33	chr8:61682600-61694800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr8:61682800-61687200	Enhancers	GM12878-XiMat	blood
35	chr8:61683400-61694000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr8:61683600-61691400	Weak transcription	Fetal Intestine Large	intestine
37	chr8:61683600-61711200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr8:61683800-61692800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr8:61683800-61693800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr8:61683800-61695800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr8:61684000-61688600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:61684000-61692200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr8:61684200-61689000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr8:61684800-61687400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:61685000-61687200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr8:61685000-61687400	Enhancers	Brain Hippocampus Middle	brain
47	chr8:61685000-61688800	Weak transcription	Primary B cells from cord blood	blood
48	chr8:61685200-61687200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr8:61685200-61687400	Enhancers	Stomach Smooth Muscle	stomach
50	chr8:61685200-61691800	Enhancers	Cortex derived primary cultured neurospheres	brain

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