Variant report

Variant	rs35254359
Chromosome Location	chr8:61682027-61682028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61676372..61677908-chr8:61681345..61682979,2	MCF-7	breast:
2	chr8:61681827..61683875-chr8:61893342..61894850,2	MCF-7	breast:
3	chr8:61681233..61684163-chr8:61687430..61689381,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088263	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1038353	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10957159	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957160	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11775560	0.96[ASN][1000 genomes]
rs12056700	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13255052	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13278198	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326597	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34022185	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34345692	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35149496	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35687554	0.83[AMR][1000 genomes]
rs35914442	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471900	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471904	0.85[AMR][1000 genomes]
rs67670110	0.85[AMR][1000 genomes]
rs6987611	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6988835	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989150	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6994642	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7460516	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823926	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7833957	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7846314	0.98[ASN][1000 genomes]
rs9298041	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1022801	chr8:61623974-61738067	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539632	chr8:61623974-61738067	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1797364	chr8:61658362-61696231	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61657000-61690400	Weak transcription	HepG2	liver
2	chr8:61658400-61683200	Weak transcription	Fetal Intestine Large	intestine
3	chr8:61672000-61694400	Weak transcription	A549	lung
4	chr8:61672200-61693400	Weak transcription	Hela-S3	cervix
5	chr8:61672200-61694000	Weak transcription	HUVEC	blood vessel
6	chr8:61672600-61685400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:61675000-61682400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:61675000-61683200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:61675000-61687000	Weak transcription	Fetal Stomach	stomach
10	chr8:61676400-61687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:61677000-61691800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:61677200-61683200	Enhancers	Fetal Heart	heart
13	chr8:61678000-61687600	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:61678200-61683600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:61678400-61687400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr8:61678400-61687600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:61678800-61683800	Enhancers	Brain Substantia Nigra	brain
18	chr8:61678800-61687600	Enhancers	Brain Germinal Matrix	brain
19	chr8:61679000-61682600	Enhancers	Stomach Mucosa	stomach
20	chr8:61679000-61683600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:61679000-61683800	Enhancers	Brain Hippocampus Middle	brain
22	chr8:61679000-61684000	Enhancers	Small Intestine	intestine
23	chr8:61679000-61686800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr8:61679200-61682800	Enhancers	Primary B cells from cord blood	blood
25	chr8:61679200-61684400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr8:61679400-61682200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:61679400-61683000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:61679400-61683800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr8:61679600-61682600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:61679600-61683600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr8:61679600-61684000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:61679600-61684200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr8:61679600-61687200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:61679600-61688200	Enhancers	Fetal Lung	lung
35	chr8:61680000-61682400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:61680000-61683200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr8:61680000-61698600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:61680200-61683400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:61680200-61683800	Enhancers	Duodenum Mucosa	Duodenum
40	chr8:61680200-61685600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:61680200-61686000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr8:61680200-61686600	Weak transcription	Fetal Brain Male	brain
43	chr8:61680200-61694800	Weak transcription	Lung	lung
44	chr8:61680200-61694800	Weak transcription	K562	blood
45	chr8:61680200-61696200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:61680200-61704200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:61680200-61705200	Weak transcription	Esophagus	oesophagus
48	chr8:61680200-61710400	Weak transcription	Pancreas	Pancrea
49	chr8:61680400-61682200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr8:61680400-61685600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links