Variant report

Variant	rs35729554
Chromosome Location	chr6:4242731-4242732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf201-12	chr6:4242636-4242824	NONHSAT107356
2	lnc-C6orf201-12	chr6:4242636-4242824	NONHSAT107357
3	lnc-C6orf201-12	chr6:4242636-4242824	NONHSAT107358

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1034032	1.00[ASN][1000 genomes]
rs11752585	1.00[ASN][1000 genomes]
rs11753020	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11970115	1.00[ASN][1000 genomes]
rs13192123	1.00[ASN][1000 genomes]
rs13197025	1.00[ASN][1000 genomes]
rs13197516	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207648	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13213431	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1327990	1.00[ASN][1000 genomes]
rs1327992	1.00[ASN][1000 genomes]
rs1410296	1.00[ASN][1000 genomes]
rs1576142	1.00[ASN][1000 genomes]
rs2002920	1.00[ASN][1000 genomes]
rs2002922	1.00[ASN][1000 genomes]
rs2149097	1.00[ASN][1000 genomes]
rs2149098	1.00[ASN][1000 genomes]
rs34635954	1.00[ASN][1000 genomes]
rs34697725	1.00[ASN][1000 genomes]
rs34871965	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35281314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389479	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35928057	1.00[ASN][1000 genomes]
rs35940593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042165	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36069200	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36099042	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6597033	1.00[ASN][1000 genomes]
rs6597053	1.00[ASN][1000 genomes]
rs6912138	1.00[ASN][1000 genomes]
rs6912707	1.00[ASN][1000 genomes]
rs6938649	1.00[ASN][1000 genomes]
rs71555837	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71555844	1.00[ASN][1000 genomes]
rs7745239	1.00[ASN][1000 genomes]
rs7751774	1.00[ASN][1000 genomes]
rs7769863	1.00[ASN][1000 genomes]
rs7770426	1.00[ASN][1000 genomes]
rs932847	1.00[ASN][1000 genomes]
rs9378858	1.00[ASN][1000 genomes]
rs9405722	1.00[ASN][1000 genomes]
rs9503947	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv600861	chr6:4238488-4469641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv462618	chr6:4238488-4472587	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv600862	chr6:4238488-4472587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4242600-4243000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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