Variant report

Variant	rs11752585
Chromosome Location	chr6:4169695-4169696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4164447..4168248-chr6:4168446..4171415,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1034032	1.00[ASN][1000 genomes]
rs1123555	0.97[EUR][1000 genomes]
rs11970115	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192123	1.00[ASN][1000 genomes]
rs13197025	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197516	1.00[ASN][1000 genomes]
rs1327990	1.00[ASN][1000 genomes]
rs1327992	1.00[ASN][1000 genomes]
rs1360811	0.97[EUR][1000 genomes]
rs1410296	1.00[ASN][1000 genomes]
rs1576142	1.00[ASN][1000 genomes]
rs17137823	0.97[EUR][1000 genomes]
rs1932186	0.97[EUR][1000 genomes]
rs2002920	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002922	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149097	1.00[ASN][1000 genomes]
rs2149098	1.00[ASN][1000 genomes]
rs2326472	0.97[EUR][1000 genomes]
rs34635954	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34697725	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281314	1.00[ASN][1000 genomes]
rs35729554	1.00[ASN][1000 genomes]
rs35801932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35928057	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940593	1.00[ASN][1000 genomes]
rs36069200	1.00[ASN][1000 genomes]
rs6597033	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6597034	0.97[EUR][1000 genomes]
rs6597035	0.96[EUR][1000 genomes]
rs6597038	0.97[EUR][1000 genomes]
rs6597053	1.00[ASN][1000 genomes]
rs6912138	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912707	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932643	0.97[EUR][1000 genomes]
rs6933147	0.97[EUR][1000 genomes]
rs6938649	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71555844	1.00[ASN][1000 genomes]
rs7743925	0.97[EUR][1000 genomes]
rs7745239	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748217	0.88[CEU][hapmap]
rs7749039	1.00[CEU][hapmap]
rs7749050	1.00[CEU][hapmap]
rs7749536	1.00[CEU][hapmap]
rs7751774	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761775	0.97[EUR][1000 genomes]
rs7769863	1.00[ASN][1000 genomes]
rs7770426	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932847	1.00[ASN][1000 genomes]
rs9378858	1.00[ASN][1000 genomes]
rs9405722	1.00[ASN][1000 genomes]
rs9502132	0.97[EUR][1000 genomes]
rs9502133	0.97[EUR][1000 genomes]
rs9502134	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9502136	0.97[EUR][1000 genomes]
rs9503947	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9503950	1.00[CEU][hapmap]
rs9503952	0.97[EUR][1000 genomes]
rs9503954	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9503955	0.97[EUR][1000 genomes]
rs9503958	0.97[EUR][1000 genomes]
rs9503959	0.97[EUR][1000 genomes]
rs9503979	0.97[EUR][1000 genomes]
rs9503980	0.97[EUR][1000 genomes]
rs9503981	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4164400-4182200	Weak transcription	Left Ventricle	heart
2	chr6:4168800-4169800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:4168800-4171200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:4169000-4169800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:4169000-4169800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:4169000-4170000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:4169000-4170200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:4169200-4169800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:4169200-4169800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:4169200-4169800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:4169200-4170000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:4169200-4170000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:4169200-4170000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:4169200-4170000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:4169200-4170000	Enhancers	Brain Anterior Caudate	brain
16	chr6:4169400-4170000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr6:4169400-4182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:4169600-4170000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:4169600-4170000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:4169600-4170000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:4169600-4170000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:4169600-4170400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:4169600-4172000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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