Variant report

Variant	rs9502133
Chromosome Location	chr6:4209385-4209386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1123555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11752585	0.97[EUR][1000 genomes]
rs11970115	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13197025	0.97[EUR][1000 genomes]
rs1360811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17137823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1932186	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2002920	0.96[EUR][1000 genomes]
rs2002922	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2326472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34635954	0.98[EUR][1000 genomes]
rs34697725	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35801932	0.97[EUR][1000 genomes]
rs35928057	0.96[EUR][1000 genomes]
rs6597033	0.97[EUR][1000 genomes]
rs6597034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6597035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6597038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912138	0.98[EUR][1000 genomes]
rs6912707	0.97[EUR][1000 genomes]
rs6932643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938649	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7743925	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745239	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7748217	0.94[YRI][hapmap]
rs7749039	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7749050	1.00[CEU][hapmap]
rs7749536	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7751774	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7761775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770426	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9502132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9502134	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9502136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503947	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503950	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9503952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503954	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503955	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9503981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4207600-4209800	Enhancers	Adipose Nuclei	Adipose
2	chr6:4207600-4209800	Enhancers	Stomach Smooth Muscle	stomach
3	chr6:4207800-4209600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:4207800-4210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:4207800-4211200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:4208400-4209600	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:4208400-4210800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:4208400-4211000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:4208600-4209400	Enhancers	Primary B cells from cord blood	blood
10	chr6:4208600-4210400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:4208600-4211000	Enhancers	Primary T cells from cord blood	blood
12	chr6:4208800-4209600	Enhancers	HMEC	breast
13	chr6:4208800-4209800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:4208800-4211200	Weak transcription	Right Atrium	heart
15	chr6:4208800-4212400	Weak transcription	Psoas Muscle	Psoas
16	chr6:4208800-4212400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:4208800-4212600	Weak transcription	Fetal Heart	heart
18	chr6:4209000-4209400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:4209000-4209600	Enhancers	NHEK	skin
20	chr6:4209000-4210800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:4209000-4210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:4209000-4211000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:4209000-4211200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:4209200-4209600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:4209200-4209600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:4209200-4209800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:4209200-4209800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:4209200-4210000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:4209200-4210600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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