Variant report

Variant	rs6938649
Chromosome Location	chr6:4185319-4185320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:4185221-4185449	MCF10A-Er-Src	breast:	n/a	chr6:4185354-4185364
2	SETDB1	chr6:4185056-4185769	U2OS	brain:	n/a	n/a
3	FOS	chr6:4185245-4185360	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4130992..4133785-chr6:4183388..4185664,2	K562	blood:

Variant related genes	Relation type
ENSG00000216307	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1034032	1.00[ASN][1000 genomes]
rs1123555	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11752585	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970115	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192123	1.00[ASN][1000 genomes]
rs13197025	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197516	1.00[ASN][1000 genomes]
rs1327990	1.00[ASN][1000 genomes]
rs1327992	1.00[ASN][1000 genomes]
rs1360811	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1410296	1.00[ASN][1000 genomes]
rs1576142	1.00[ASN][1000 genomes]
rs17137823	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1932186	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2002920	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002922	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149097	1.00[ASN][1000 genomes]
rs2149098	1.00[ASN][1000 genomes]
rs2326472	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34635954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34697725	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281314	1.00[ASN][1000 genomes]
rs35729554	1.00[ASN][1000 genomes]
rs35801932	0.99[EUR][1000 genomes]
rs35928057	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940593	1.00[ASN][1000 genomes]
rs36069200	1.00[ASN][1000 genomes]
rs6597033	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6597034	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6597035	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6597038	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6597053	1.00[ASN][1000 genomes]
rs6912138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912707	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932643	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6933147	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71555844	1.00[ASN][1000 genomes]
rs7743925	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7745239	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749039	1.00[CEU][hapmap]
rs7749050	1.00[CEU][hapmap]
rs7749536	1.00[CEU][hapmap]
rs7751774	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7769863	1.00[ASN][1000 genomes]
rs7770426	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932847	1.00[ASN][1000 genomes]
rs9378858	1.00[ASN][1000 genomes]
rs9405722	1.00[ASN][1000 genomes]
rs9502132	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9502133	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9502134	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9502136	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503947	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9503950	1.00[CEU][hapmap]
rs9503952	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503954	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503955	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503958	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503959	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503979	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9503981	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4173600-4186200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:4173600-4189200	Weak transcription	Spleen	Spleen
3	chr6:4179600-4187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:4181400-4185400	Weak transcription	K562	blood

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