Variant report

Variant	rs35732386
Chromosome Location	chr3:112410787-112410788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112362227..112366265-chr3:112408651..112412487,6	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12666270	0.86[EUR][1000 genomes]
rs13239262	0.85[AFR][1000 genomes]
rs1816636	0.85[EUR][1000 genomes]
rs1821840	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2196625	0.83[EUR][1000 genomes]
rs2196629	0.88[EUR][1000 genomes]
rs2217990	0.80[AMR][1000 genomes]
rs2217992	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2315742	0.85[AFR][1000 genomes]
rs2340128	0.95[EUR][1000 genomes]
rs2340129	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2340580	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34440380	0.83[AMR][1000 genomes]
rs34563824	0.90[EUR][1000 genomes]
rs34668393	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35196040	0.86[AMR][1000 genomes]
rs35358987	0.83[AMR][1000 genomes]
rs35539125	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35871520	0.96[EUR][1000 genomes]
rs36079292	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs36199280	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36200549	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62459428	0.80[AFR][1000 genomes]
rs62459452	0.80[AFR][1000 genomes]
rs62459490	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62461575	0.84[EUR][1000 genomes]
rs62461584	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62463290	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62463326	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs71548923	0.87[EUR][1000 genomes]
rs8185403	0.93[EUR][1000 genomes]
rs8185631	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8188443	0.85[EUR][1000 genomes]
rs9918585	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv979866	chr3:112409140-112416297	Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112401200-112413800	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:112405400-112411800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:112405400-112412000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:112405800-112411800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:112406000-112411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:112407400-112415000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:112407800-112413800	Weak transcription	NHDF-Ad	bronchial
8	chr3:112408400-112411800	Weak transcription	K562	blood
9	chr3:112408800-112412000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:112408800-112412400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:112408800-112413800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:112409000-112411400	Weak transcription	Adipose Nuclei	Adipose
13	chr3:112409200-112411800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:112409200-112412400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:112409200-112414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:112409400-112413800	Weak transcription	Osteobl	bone
17	chr3:112409400-112414400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:112409400-112414800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:112409400-112418200	Weak transcription	A549	lung
20	chr3:112409400-112418400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:112409600-112411600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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