Variant report

Variant	rs35752464
Chromosome Location	chr16:30486219-30486220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:30465004..30466750-chr16:30485163..30487457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202476	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1348039	1.00[AMR][1000 genomes]
rs1470129	1.00[AMR][1000 genomes]
rs2919428	1.00[AMR][1000 genomes]
rs2972805	1.00[AMR][1000 genomes]
rs2972806	1.00[AMR][1000 genomes]
rs34838942	1.00[AMR][1000 genomes]
rs35590751	1.00[AMR][1000 genomes]
rs4889502	1.00[AMR][1000 genomes]
rs58723456	1.00[AMR][1000 genomes]
rs59474645	1.00[AMR][1000 genomes]
rs74015010	1.00[AMR][1000 genomes]
rs74015011	1.00[AMR][1000 genomes]
rs74015012	1.00[AMR][1000 genomes]
rs893924	1.00[AMR][1000 genomes]
rs893925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
4	nsv1783	chr16:30449450-30494321	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30483000-30486600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr16:30483000-30487000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr16:30484400-30486400	Active TSS	Duodenum Mucosa	Duodenum
4	chr16:30484800-30486400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr16:30485000-30486600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr16:30485200-30487000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
7	chr16:30485200-30487000	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
8	chr16:30485200-30487600	Enhancers	Placenta	Placenta
9	chr16:30485200-30499600	Weak transcription	Liver	Liver
10	chr16:30485400-30486800	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
11	chr16:30485400-30486800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr16:30485600-30486800	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:30485600-30486800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr16:30485600-30487000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
15	chr16:30485600-30487000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr16:30485600-30487400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
17	chr16:30485600-30500200	Weak transcription	Dnd41	blood
18	chr16:30485800-30486400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr16:30485800-30486400	Weak transcription	Spleen	Spleen
20	chr16:30485800-30486600	Weak transcription	Lung	lung
21	chr16:30485800-30486800	Genic enhancers	Primary B cells from peripheral blood	blood
22	chr16:30485800-30486800	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
23	chr16:30485800-30487000	Genic enhancers	Primary monocytes fromperipheralblood	blood
24	chr16:30485800-30490200	Weak transcription	Primary B cells from cord blood	blood
25	chr16:30485800-30492800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr16:30485800-30500200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr16:30485800-30521400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr16:30486000-30486400	Genic enhancers	Thymus	Thymus
29	chr16:30486000-30486600	Weak transcription	Esophagus	oesophagus
30	chr16:30486000-30486600	Genic enhancers	Monocytes-CD14+_RO01746	blood
31	chr16:30486000-30487000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr16:30486000-30487000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
33	chr16:30486000-30487000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
34	chr16:30486000-30490600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr16:30486000-30510600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr16:30486200-30486400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr16:30486200-30487000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:30486200-30494600	Weak transcription	Rectal Mucosa Donor 29	rectum

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