Variant report

Variant	rs34838942
Chromosome Location	chr16:30516565-30516566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30493868..30496718-chr16:30515344..30518090,2	K562	blood:
2	chr16:30513905..30517133-chr16:30536208..30538524,4	MCF-7	breast:
3	chr16:30514629..30516699-chr16:30537334..30538989,2	K562	blood:
4	chr16:30514339..30516665-chr16:30568095..30569854,2	K562	blood:

Variant related genes	Relation type
ENSG00000005844	Chromatin interaction
ENSG00000251706	Chromatin interaction
ENSG00000260869	Chromatin interaction
ENSG00000169951	Chromatin interaction
ENSG00000169957	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1348039	1.00[AMR][1000 genomes]
rs1470129	1.00[AMR][1000 genomes]
rs1530201	1.00[AMR][1000 genomes]
rs2919428	1.00[AMR][1000 genomes]
rs2972805	1.00[AMR][1000 genomes]
rs2972806	1.00[AMR][1000 genomes]
rs35590751	1.00[AMR][1000 genomes]
rs35752464	1.00[AMR][1000 genomes]
rs4889502	1.00[AMR][1000 genomes]
rs4889506	1.00[AMR][1000 genomes]
rs58723456	1.00[AMR][1000 genomes]
rs59474645	1.00[AMR][1000 genomes]
rs7188927	1.00[AMR][1000 genomes]
rs74015010	1.00[AMR][1000 genomes]
rs74015011	1.00[AMR][1000 genomes]
rs74015012	1.00[AMR][1000 genomes]
rs893924	1.00[AMR][1000 genomes]
rs893925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30485800-30521400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:30486800-30533400	Weak transcription	Esophagus	oesophagus
3	chr16:30487000-30534800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr16:30489000-30534000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:30490000-30518800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr16:30490600-30521000	Weak transcription	Colonic Mucosa	Colon
7	chr16:30490800-30534600	Strong transcription	Thymus	Thymus
8	chr16:30491000-30534000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr16:30491600-30533800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr16:30492200-30534600	Strong transcription	Fetal Thymus	thymus
11	chr16:30496800-30518400	Strong transcription	Primary T cells from cord blood	blood
12	chr16:30500400-30527800	Weak transcription	Gastric	stomach
13	chr16:30503400-30534000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr16:30503600-30534600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr16:30504400-30533400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr16:30505000-30534000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr16:30505000-30534400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr16:30506000-30519800	Weak transcription	Lung	lung
19	chr16:30507800-30526600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr16:30507800-30534000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr16:30508800-30517200	Weak transcription	Small Intestine	intestine
22	chr16:30508800-30535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr16:30509600-30532000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr16:30509800-30528400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr16:30510200-30520600	Weak transcription	Fetal Intestine Small	intestine
26	chr16:30510800-30516600	Weak transcription	Fetal Muscle Leg	muscle
27	chr16:30510800-30518000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr16:30510800-30535800	Weak transcription	Right Atrium	heart
29	chr16:30511000-30516600	Weak transcription	Dnd41	blood
30	chr16:30511000-30521600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr16:30511800-30517000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr16:30511800-30519200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr16:30512000-30534000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr16:30514400-30517200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr16:30514400-30534600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr16:30514600-30516800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr16:30514600-30517200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr16:30514600-30517400	Strong transcription	Primary B cells from cord blood	blood
39	chr16:30514600-30518400	Strong transcription	GM12878-XiMat	blood
40	chr16:30515000-30518400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:30515000-30518400	Strong transcription	Liver	Liver
42	chr16:30515200-30523200	Weak transcription	Brain Anterior Caudate	brain
43	chr16:30515400-30517200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr16:30515600-30516800	Genic enhancers	Primary T cells fromperipheralblood	blood
45	chr16:30515600-30518000	Strong transcription	Spleen	Spleen
46	chr16:30515600-30520000	Weak transcription	K562	blood
47	chr16:30515600-30527800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr16:30516400-30516600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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