Variant report

Variant	rs35590751
Chromosome Location	chr16:30522787-30522788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30520573..30524567-chr16:30535660..30540448,6	MCF-7	breast:
2	chr16:30521739..30524331-chr16:30526621..30529422,2	MCF-7	breast:
3	chr16:30521063..30523608-chr16:30533658..30535271,2	MCF-7	breast:
4	chr16:30521353..30524779-chr16:30533679..30536842,3	K562	blood:

Variant related genes	Relation type
ENSG00000169957	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1348039	1.00[AMR][1000 genomes]
rs1470129	1.00[AMR][1000 genomes]
rs1530201	1.00[AMR][1000 genomes]
rs2919428	1.00[AMR][1000 genomes]
rs2972805	1.00[AMR][1000 genomes]
rs2972806	1.00[AMR][1000 genomes]
rs34838942	1.00[AMR][1000 genomes]
rs35752464	1.00[AMR][1000 genomes]
rs4889502	1.00[AMR][1000 genomes]
rs4889506	1.00[AMR][1000 genomes]
rs58723456	1.00[AMR][1000 genomes]
rs59474645	1.00[AMR][1000 genomes]
rs7188927	1.00[AMR][1000 genomes]
rs74015010	1.00[AMR][1000 genomes]
rs74015011	1.00[AMR][1000 genomes]
rs74015012	1.00[AMR][1000 genomes]
rs893924	1.00[AMR][1000 genomes]
rs893925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
2	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30486800-30533400	Weak transcription	Esophagus	oesophagus
2	chr16:30487000-30534800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr16:30489000-30534000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:30490800-30534600	Strong transcription	Thymus	Thymus
5	chr16:30491000-30534000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr16:30491600-30533800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr16:30492200-30534600	Strong transcription	Fetal Thymus	thymus
8	chr16:30500400-30527800	Weak transcription	Gastric	stomach
9	chr16:30503400-30534000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr16:30503600-30534600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr16:30504400-30533400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr16:30505000-30534000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:30505000-30534400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr16:30507800-30526600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr16:30507800-30534000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:30508800-30535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:30509600-30532000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr16:30509800-30528400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr16:30510800-30535800	Weak transcription	Right Atrium	heart
20	chr16:30512000-30534000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr16:30514400-30534600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr16:30515200-30523200	Weak transcription	Brain Anterior Caudate	brain
23	chr16:30515600-30527800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr16:30516800-30535600	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:30518200-30537200	Weak transcription	Brain Substantia Nigra	brain
26	chr16:30519200-30531000	Weak transcription	Placenta	Placenta
27	chr16:30519600-30525600	Strong transcription	Liver	Liver
28	chr16:30519600-30533600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:30519800-30523000	Strong transcription	Lung	lung
30	chr16:30519800-30523200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr16:30519800-30523800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr16:30519800-30528400	Strong transcription	Primary B cells from cord blood	blood
33	chr16:30519800-30530000	Strong transcription	Primary T cells from cord blood	blood
34	chr16:30519800-30531400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
35	chr16:30519800-30536400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:30520000-30532000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:30520200-30528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr16:30520600-30523600	Enhancers	Fetal Intestine Small	intestine
39	chr16:30520600-30534000	Strong transcription	GM12878-XiMat	blood
40	chr16:30520800-30527600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr16:30520800-30533000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr16:30521400-30527200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr16:30521800-30523200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr16:30521800-30523400	Strong transcription	Dnd41	blood
45	chr16:30521800-30526600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr16:30522200-30525800	Weak transcription	HepG2	liver
47	chr16:30522400-30522800	Weak transcription	Fetal Intestine Large	intestine
48	chr16:30522400-30533000	Weak transcription	Colonic Mucosa	Colon
49	chr16:30522400-30533600	Strong transcription	Spleen	Spleen
50	chr16:30522400-30536000	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links