Variant report

Variant	rs1530201
Chromosome Location	chr16:30778645-30778646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr16:30777843-30778670	PBDE	blood:	n/a	chr16:30778225-30778235 chr16:30778228-30778235 chr16:30778228-30778237

No.	Distal block	Cell Line	Cell type
1	chr16:30776330..30778748-chr16:30824308..30826910,2	MCF-7	breast:
2	chr16:30709491..30711617-chr16:30777557..30779616,3	K562	blood:
3	chr16:30775867..30779905-chr16:30959923..30961895,3	K562	blood:
4	chr16:30675275..30677397-chr16:30777195..30778721,2	MCF-7	breast:
5	chr16:30777672..30780063-chr16:30933976..30935997,2	K562	blood:
6	chr16:30709491..30711617-chr16:30777557..30779152,2	K562	blood:

Variant related genes	Relation type
RNF40	TF binding region
C16orf93	TF binding region
ENSG00000261840	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000080603	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000175938	Chromatin interaction
ENSG00000156860	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1348039	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1470129	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2919428	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2919432	1.00[MKK][hapmap]
rs2972805	1.00[AMR][1000 genomes]
rs2972806	1.00[AMR][1000 genomes]
rs2972808	1.00[MKK][hapmap]
rs2972809	1.00[MKK][hapmap]
rs34838942	1.00[AMR][1000 genomes]
rs35590751	1.00[AMR][1000 genomes]
rs4889492	1.00[AMR][1000 genomes]
rs4889502	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889503	1.00[MKK][hapmap]
rs4889505	1.00[MKK][hapmap]
rs4889506	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55821738	1.00[AMR][1000 genomes]
rs58723456	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59474645	1.00[AMR][1000 genomes]
rs61678005	1.00[AMR][1000 genomes]
rs62057229	1.00[AMR][1000 genomes]
rs6420450	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7188789	0.82[YRI][hapmap]
rs7188927	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7194347	0.81[YRI][hapmap]
rs74015010	1.00[AMR][1000 genomes]
rs74015011	1.00[AMR][1000 genomes]
rs74015012	1.00[AMR][1000 genomes]
rs74015056	1.00[AMR][1000 genomes]
rs8048656	1.00[MKK][hapmap]
rs893924	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893925	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925025	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	nsv9438	chr16:30770203-30799442	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30774200-30786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:30774400-30780800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr16:30774600-30781400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:30774600-30785400	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr16:30774600-30786200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:30774800-30785000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:30774800-30785800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr16:30774800-30786200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:30774800-30786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr16:30775000-30784200	Strong transcription	HSMMtube	muscle
11	chr16:30775000-30784400	Strong transcription	Primary B cells from cord blood	blood
12	chr16:30775000-30785400	Strong transcription	Aorta	Aorta
13	chr16:30775000-30785800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:30775000-30785800	Strong transcription	Brain Substantia Nigra	brain
15	chr16:30775000-30786000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:30775000-30786000	Strong transcription	NH-A	brain
17	chr16:30775000-30786200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:30775000-30786200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:30775000-30786200	Strong transcription	Fetal Thymus	thymus
20	chr16:30775000-30786400	Strong transcription	Thymus	Thymus
21	chr16:30775200-30781200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:30775200-30781400	Strong transcription	HSMM	muscle
23	chr16:30775200-30785200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr16:30775200-30785400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:30775200-30785600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr16:30775200-30785600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr16:30775200-30785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr16:30775200-30785800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr16:30775200-30785800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr16:30775200-30785800	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr16:30775200-30786000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr16:30775200-30786000	Strong transcription	Primary hematopoietic stem cells	blood
33	chr16:30775200-30786000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr16:30775200-30786000	Strong transcription	HUVEC	blood vessel
35	chr16:30775200-30786000	Strong transcription	NHLF	lung
36	chr16:30775200-30786200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr16:30775200-30786200	Strong transcription	A549	lung
38	chr16:30775400-30779400	Strong transcription	Fetal Kidney	kidney
39	chr16:30775400-30781200	Strong transcription	NHDF-Ad	bronchial
40	chr16:30775400-30781400	Strong transcription	NHEK	skin
41	chr16:30775400-30785400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:30775400-30785400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr16:30775400-30785600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr16:30775400-30785800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr16:30775400-30786000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr16:30775400-30786000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:30775400-30786000	Strong transcription	Primary T cells from cord blood	blood
48	chr16:30775400-30786000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:30775400-30786000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr16:30775400-30786000	Strong transcription	Muscle Satellite Cultured Cells	--

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