Variant report

Variant	rs35766947
Chromosome Location	chr15:75015907-75015908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17861132	1.00[AMR][1000 genomes]
rs17861150	1.00[AMR][1000 genomes]
rs34268526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34445263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36074335	1.00[AMR][1000 genomes]
rs36099343	1.00[AMR][1000 genomes]
rs45485195	1.00[AMR][1000 genomes]
rs4986879	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163349	1.00[AMR][1000 genomes]
rs7170811	1.00[AMR][1000 genomes]
rs7170823	1.00[AMR][1000 genomes]
rs7182554	1.00[AMR][1000 genomes]
rs7496533	1.00[AMR][1000 genomes]
rs8031941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036155	1.00[AMR][1000 genomes]
rs8042063	1.00[AMR][1000 genomes]
rs959572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75012400-75017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75012800-75016200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:75012800-75016600	Weak transcription	Liver	Liver
4	chr15:75013000-75017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:75013000-75018000	Weak transcription	Left Ventricle	heart
6	chr15:75014200-75018200	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr15:75015200-75016000	Enhancers	HepG2	liver
8	chr15:75015600-75016200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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