Variant report

Variant	rs8031941
Chromosome Location	chr15:75016649-75016650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17861132	1.00[AMR][1000 genomes]
rs17861150	1.00[AMR][1000 genomes]
rs34268526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34445263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35766947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36074335	1.00[AMR][1000 genomes]
rs36099343	1.00[AMR][1000 genomes]
rs3809585	1.00[YRI][hapmap]
rs45485195	1.00[AMR][1000 genomes]
rs4986879	1.00[ASW][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163349	1.00[AMR][1000 genomes]
rs7170811	1.00[AMR][1000 genomes]
rs7170823	1.00[AMR][1000 genomes]
rs7182554	1.00[AMR][1000 genomes]
rs7496533	1.00[AMR][1000 genomes]
rs8036155	1.00[AMR][1000 genomes]
rs8042063	1.00[AMR][1000 genomes]
rs959572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75012400-75017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75013000-75017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:75013000-75018000	Weak transcription	Left Ventricle	heart
4	chr15:75014200-75018200	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr15:75016000-75016800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:75016000-75016800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:75016000-75016800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:75016000-75016800	Bivalent Enhancer	NHDF-Ad	bronchial
9	chr15:75016000-75017400	Enhancers	Hela-S3	cervix
10	chr15:75016000-75018000	Flanking Active TSS	HepG2	liver
11	chr15:75016200-75016800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:75016200-75017000	Active TSS	Lung	lung
13	chr15:75016200-75017600	Enhancers	Placenta	Placenta
14	chr15:75016200-75017600	Enhancers	A549	lung
15	chr15:75016400-75016800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:75016400-75017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:75016600-75017000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:75016600-75018000	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links