Variant report

Variant	rs7182554
Chromosome Location	chr15:75023936-75023937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17861132	1.00[AMR][1000 genomes]
rs17861150	1.00[AMR][1000 genomes]
rs34268526	1.00[AMR][1000 genomes]
rs34445263	1.00[AMR][1000 genomes]
rs35766947	1.00[AMR][1000 genomes]
rs36074335	1.00[AMR][1000 genomes]
rs36099343	1.00[AMR][1000 genomes]
rs45485195	1.00[AMR][1000 genomes]
rs4986879	1.00[AMR][1000 genomes]
rs7163349	1.00[AMR][1000 genomes]
rs7170811	1.00[AMR][1000 genomes]
rs7170823	1.00[AMR][1000 genomes]
rs7496533	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031941	1.00[AMR][1000 genomes]
rs8036155	1.00[AMR][1000 genomes]
rs8042063	1.00[AMR][1000 genomes]
rs959572	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
2	chr15:75022200-75024000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:75022200-75024400	Enhancers	Fetal Intestine Small	intestine
4	chr15:75022200-75025800	Enhancers	Liver	Liver
5	chr15:75022600-75025600	Enhancers	Hela-S3	cervix
6	chr15:75022800-75024000	Enhancers	Lung	lung
7	chr15:75022800-75024200	Bivalent Enhancer	NHDF-Ad	bronchial
8	chr15:75023000-75024200	Flanking Active TSS	HepG2	liver
9	chr15:75023400-75024000	Bivalent Enhancer	Fetal Intestine Large	intestine
10	chr15:75023800-75024400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:75023800-75025200	Enhancers	NHEK	skin
12	chr15:75023800-75041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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