Variant report

Variant	rs35774966
Chromosome Location	chr17:33907349-33907350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:33901409-33907583	K562	blood:	n/a	n/a
2	POLR2A	chr17:33907335-33907488	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:33905920..33908004-chr17:33983373..33986029,2	K562	blood:
2	chr17:33903370..33909494-chr17:33910892..33920548,27	MCF-7	breast:
3	chr17:33891810..33896606-chr17:33903023..33907452,11	MCF-7	breast:
4	chr17:33569405..33571509-chr17:33905703..33907784,3	MCF-7	breast:

Variant related genes	Relation type
PEX12	TF binding region
ENSG00000242660	Chromatin interaction
ENSG00000266947	Chromatin interaction
ENSG00000267321	Chromatin interaction
ENSG00000006125	Chromatin interaction
ENSG00000166750	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11650225	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650621	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651380	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652390	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653354	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654542	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656872	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657558	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12936539	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12936693	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12937370	0.81[AFR][1000 genomes]
rs12939138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939481	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939818	0.81[AFR][1000 genomes]
rs12940370	0.81[AFR][1000 genomes]
rs12940422	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12940584	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943224	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945102	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945419	0.81[AFR][1000 genomes]
rs12945980	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947274	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12949877	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12951703	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17606150	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608253	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17638076	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669281	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670584	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670614	0.87[EUR][1000 genomes]
rs17676508	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063751	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34874930	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34937989	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3506	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515868	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35672532	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531775	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61752107	0.90[AFR][1000 genomes]
rs71381460	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381461	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381463	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71381465	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381467	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381469	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33906400-33907400	Enhancers	Spleen	Spleen
2	chr17:33906400-33913800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:33906400-33913800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:33906600-33907400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr17:33906600-33907400	Enhancers	Thymus	Thymus
6	chr17:33906600-33910600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr17:33906600-33911000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr17:33906600-33913400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr17:33906600-33913400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr17:33906600-33913400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:33906600-33913400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:33906600-33913400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:33906600-33913400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr17:33906600-33913400	Weak transcription	Liver	Liver
15	chr17:33906600-33913400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr17:33906600-33913400	Weak transcription	NHEK	skin
17	chr17:33906600-33913800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr17:33906600-33914000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr17:33906800-33910600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr17:33906800-33911000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:33906800-33913600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr17:33907000-33907400	Enhancers	GM12878-XiMat	blood
23	chr17:33907200-33907400	Enhancers	K562	blood
24	chr17:33907200-33908000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr17:33907200-33913600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr17:33907200-33913800	Weak transcription	HepG2	liver

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