Variant report

Variant	rs17676508
Chromosome Location	chr17:34020608-34020609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11650225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653354	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654542	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655098	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11656872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657558	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12604067	0.82[CEU][hapmap]
rs12936539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12936693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939138	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939481	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12940422	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12940584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12943224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945102	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945980	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12949877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12951703	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350010	1.00[CHB][hapmap]
rs16971217	0.82[CEU][hapmap]
rs17606150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608253	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17638076	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670614	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34063751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34874930	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34937989	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35672532	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35774966	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531775	1.00[ASN][1000 genomes]
rs71381460	1.00[ASN][1000 genomes]
rs71381461	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381463	0.97[EUR][1000 genomes]
rs71381465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381469	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33921000-34024400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33960000-34024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:33975000-34025800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr17:33992800-34028200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:33995800-34024600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:33997400-34023200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:33997600-34024600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr17:33999400-34043400	Weak transcription	Fetal Brain Male	brain
11	chr17:34002000-34032200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr17:34002000-34036800	Weak transcription	Colonic Mucosa	Colon
13	chr17:34005400-34024400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:34005400-34028400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:34005600-34024400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr17:34005800-34026600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:34006000-34024400	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:34006400-34024200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr17:34006600-34032800	Weak transcription	Stomach Mucosa	stomach
20	chr17:34006600-34039800	Weak transcription	Small Intestine	intestine
21	chr17:34011000-34021800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:34011000-34022400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr17:34011000-34026600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr17:34011200-34024400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr17:34011600-34021000	Weak transcription	Colon Smooth Muscle	Colon
26	chr17:34011800-34022400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr17:34011800-34036200	Weak transcription	Hela-S3	cervix
28	chr17:34012000-34020800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr17:34012000-34021800	Weak transcription	HSMMtube	muscle
30	chr17:34012000-34022400	Weak transcription	Psoas Muscle	Psoas
31	chr17:34012000-34024400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr17:34012200-34024400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:34012200-34024400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:34012400-34022200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:34012400-34022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr17:34013600-34036000	Weak transcription	NHLF	lung
37	chr17:34014000-34023200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr17:34014600-34021800	Weak transcription	Right Ventricle	heart
39	chr17:34014600-34024800	Strong transcription	Primary B cells from cord blood	blood
40	chr17:34014800-34024600	Strong transcription	K562	blood
41	chr17:34015400-34022000	Weak transcription	Brain Substantia Nigra	brain
42	chr17:34015400-34022000	Weak transcription	Fetal Brain Female	brain
43	chr17:34015400-34022400	Strong transcription	Left Ventricle	heart
44	chr17:34015800-34020800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr17:34015800-34022600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr17:34016000-34036600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr17:34016200-34022000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr17:34016400-34020800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr17:34016400-34023000	Strong transcription	NHDF-Ad	bronchial
50	chr17:34016400-34023200	Strong transcription	Brain Anterior Caudate	brain

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