Variant report

Variant	rs11655098
Chromosome Location	chr17:33894850-33894851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11650225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650621	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651380	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652390	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653354	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11654542	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11656872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657558	1.00[ASN][1000 genomes]
rs12451876	1.00[CHB][hapmap]
rs12604067	0.82[CEU][hapmap]
rs12936539	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12936693	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939138	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939481	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12940422	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12940584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12941376	1.00[YRI][hapmap]
rs12943224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945102	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945419	1.00[YRI][hapmap]
rs12945980	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12947274	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12949877	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12951703	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350010	1.00[CHB][hapmap]
rs16971217	0.82[CEU][hapmap]
rs17606150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608253	1.00[ASN][1000 genomes]
rs17638076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17670614	0.81[EUR][1000 genomes]
rs17676508	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063751	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34874930	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34937989	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35209981	0.85[AFR][1000 genomes]
rs35390377	0.85[AFR][1000 genomes]
rs35515868	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35672532	1.00[ASN][1000 genomes]
rs35774966	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61752107	0.80[AFR][1000 genomes]
rs71381460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381461	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381464	0.81[AFR][1000 genomes]
rs71381465	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381467	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381469	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216628	1.00[CHB][hapmap]
rs8066132	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv960465	chr17:33891831-33894995	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33894000-33895400	Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr17:33894000-33895400	Active TSS	Fetal Lung	lung
3	chr17:33894000-33895800	Active TSS	Fetal Kidney	kidney
4	chr17:33894000-33896400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr17:33894000-33896400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr17:33894000-33896400	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr17:33894000-33897000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr17:33894200-33895200	Active TSS	Adipose Nuclei	Adipose
9	chr17:33894200-33895400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:33894200-33895400	Active TSS	Brain Hippocampus Middle	brain
11	chr17:33894200-33895400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr17:33894200-33895400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr17:33894200-33895400	Active TSS	Rectal Smooth Muscle	rectum
14	chr17:33894200-33895600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr17:33894200-33895600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr17:33894200-33895600	Active TSS	Brain Anterior Caudate	brain
17	chr17:33894200-33895800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr17:33894200-33896000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:33894200-33896200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr17:33894200-33896200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:33894200-33896200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr17:33894200-33896200	Active TSS	Fetal Brain Female	brain
23	chr17:33894200-33896400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr17:33894200-33896400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:33894200-33896400	Active TSS	Psoas Muscle	Psoas
26	chr17:33894200-33896600	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr17:33894200-33896600	Active TSS	A549	lung
28	chr17:33894200-33896600	Active TSS	K562	blood
29	chr17:33894200-33897000	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr17:33894400-33895000	Bivalent/Poised TSS	Fetal Stomach	stomach
31	chr17:33894400-33895200	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr17:33894400-33895200	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr17:33894400-33895200	Active TSS	Stomach Smooth Muscle	stomach
34	chr17:33894400-33895400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr17:33894400-33895400	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr17:33894400-33895400	Active TSS	Primary T cells from cord blood	blood
37	chr17:33894400-33895400	Active TSS	Brain Angular Gyrus	brain
38	chr17:33894400-33895400	Active TSS	Brain Germinal Matrix	brain
39	chr17:33894400-33895400	Active TSS	Colonic Mucosa	Colon
40	chr17:33894400-33895400	Active TSS	Duodenum Mucosa	Duodenum
41	chr17:33894400-33895400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr17:33894400-33895400	Active TSS	Fetal Intestine Small	intestine
43	chr17:33894400-33895400	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr17:33894400-33895400	Active TSS	Fetal Muscle Leg	muscle
45	chr17:33894400-33895400	Active TSS	Osteobl	bone
46	chr17:33894400-33895600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:33894400-33895600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:33894400-33895600	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr17:33894400-33895600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr17:33894400-33895600	Active TSS	Fetal Thymus	thymus

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