Variant report

Variant	rs71381460
Chromosome Location	chr17:33891621-33891622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr17:33891594-33892038	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33890829..33892673-chr17:33894883..33896486,2	MCF-7	breast:
2	chr17:33886372..33890944-chr17:33891247..33895229,11	K562	blood:

Variant related genes	Relation type
ENSG00000267625	TF binding region
ENSG00000242660	TF binding region
ENSG00000267321	TF binding region
ENSG00000267321	Chromatin interaction
ENSG00000267625	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11650225	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11650621	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11651380	1.00[ASN][1000 genomes]
rs11652390	1.00[ASN][1000 genomes]
rs11653354	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11654542	1.00[ASN][1000 genomes]
rs11656872	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11657558	1.00[ASN][1000 genomes]
rs12936539	1.00[ASN][1000 genomes]
rs12936693	1.00[ASN][1000 genomes]
rs12939138	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939481	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12940422	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12940584	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12943224	1.00[ASN][1000 genomes]
rs12945102	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12945980	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12947274	1.00[ASN][1000 genomes]
rs12949877	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12951703	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17606150	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17608253	1.00[ASN][1000 genomes]
rs17638076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669281	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17670584	1.00[ASN][1000 genomes]
rs17676508	1.00[ASN][1000 genomes]
rs34063751	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34874930	1.00[ASN][1000 genomes]
rs34937989	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3506	1.00[ASN][1000 genomes]
rs35515868	1.00[ASN][1000 genomes]
rs35672532	1.00[ASN][1000 genomes]
rs35774966	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71381461	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71381465	1.00[ASN][1000 genomes]
rs71381467	1.00[ASN][1000 genomes]
rs71381469	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33888600-33894200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:33889600-33894000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:33889800-33894000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:33890600-33892200	Flanking Active TSS	K562	blood

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