Variant report

Variant	rs35775301
Chromosome Location	chr12:10320455-10320456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:10320347-10320522	HepG2	liver:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
2	EP300	chr12:10320249-10320658	HepG2	liver:	n/a	chr12:10320360-10320374 chr12:10320482-10320496 chr12:10320365-10320379 chr12:10320421-10320435
3	SMC3	chr12:10320211-10320638	Hela-S3	cervix:	n/a	n/a
4	SPI1	chr12:10320064-10320795	HL-60	blood:	n/a	chr12:10320467-10320476
5	ARID3A	chr12:10320390-10320604	HepG2	liver:	n/a	n/a
6	FOS	chr12:10320197-10320670	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr12:10320244-10320654	MCF10A-Er-Src	breast:	n/a	n/a
8	NR2F2	chr12:10320284-10320657	HepG2	liver:	n/a	chr12:10320451-10320466
9	EP300	chr12:10320324-10320524	HepG2	liver:	n/a	chr12:10320360-10320374 chr12:10320482-10320496 chr12:10320365-10320379 chr12:10320421-10320435
10	TCF7L2	chr12:10320281-10320671	HepG2	liver:	n/a	chr12:10320542-10320556 chr12:10320545-10320554 chr12:10320543-10320553 chr12:10320541-10320557 chr12:10320541-10320557
11	EP300	chr12:10320107-10320644	Hela-S3	cervix:	n/a	chr12:10320360-10320374 chr12:10320482-10320496 chr12:10320365-10320379 chr12:10320421-10320435
12	TCF7L2	chr12:10320403-10320611	PANC-1	pancreas:	n/a	chr12:10320542-10320556 chr12:10320545-10320554 chr12:10320543-10320553 chr12:10320541-10320557 chr12:10320541-10320557
13	CEBPB	chr12:10320074-10320715	Hela-S3	cervix:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
14	SPI1	chr12:10320297-10320584	GM12891	blood:	n/a	chr12:10320467-10320476
15	MAX	chr12:10320311-10320604	NB4	blood:	n/a	n/a
16	CEBPB	chr12:10320300-10320600	K562	blood:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
17	CHD2	chr12:10320272-10320743	Hela-S3	cervix:	n/a	n/a
18	MYC	chr12:10320259-10320600	MCF10A-Er-Src	breast:	n/a	n/a
19	MYC	chr12:10320199-10320650	MCF10A-Er-Src	breast:	n/a	n/a
20	STAT3	chr12:10320143-10320707	Hela-S3	cervix:	n/a	chr12:10320276-10320283
21	GTF2F1	chr12:10320195-10320684	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr12:10319165-10320805	Hela-S3	cervix:	n/a	n/a
23	FOS	chr12:10320313-10320534	MCF10A-Er-Src	breast:	n/a	n/a
24	CEBPB	chr12:10320258-10320654	HepG2	liver:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
25	NFIC	chr12:10320231-10320646	HepG2	liver:	n/a	n/a
26	SPI1	chr12:10320228-10320670	GM12891	blood:	n/a	chr12:10320467-10320476
27	STAT3	chr12:10320279-10320641	MCF10A-Er-Src	breast:	n/a	n/a
28	TCF7L2	chr12:10320281-10320846	Hela-S3	cervix:	n/a	chr12:10320542-10320556 chr12:10320545-10320554 chr12:10320543-10320553 chr12:10320541-10320557 chr12:10320541-10320557
29	PRDM1	chr12:10320228-10320567	Hela-S3	cervix:	n/a	chr12:10320413-10320428
30	TCF7L2	chr12:10320197-10320811	Hela-S3	cervix:	n/a	chr12:10320542-10320556 chr12:10320545-10320554 chr12:10320543-10320553 chr12:10320541-10320557 chr12:10320541-10320557
31	CEBPB	chr12:10320264-10320637	IMR90	lung:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
32	USF2	chr12:10320133-10320648	Hela-S3	cervix:	n/a	n/a
33	FOS	chr12:10320215-10320607	MCF10A-Er-Src	breast:	n/a	n/a
34	RCOR1	chr12:10320217-10320695	Hela-S3	cervix:	n/a	n/a
35	STAT3	chr12:10320288-10320664	MCF10A-Er-Src	breast:	n/a	n/a
36	MAX	chr12:10320180-10320623	Hela-S3	cervix:	n/a	n/a
37	STAT3	chr12:10320303-10320627	MCF10A-Er-Src	breast:	n/a	n/a
38	STAT3	chr12:10320244-10320668	MCF10A-Er-Src	breast:	n/a	chr12:10320276-10320283
39	CEBPB	chr12:10320300-10320605	A549	lung:	n/a	chr12:10320484-10320495 chr12:10320485-10320496 chr12:10320424-10320435 chr12:10320423-10320436
40	MYC	chr12:10320245-10320619	NB4	blood:	n/a	n/a
41	SPI1	chr12:10320297-10320589	GM12878	blood:	n/a	chr12:10320467-10320476
42	SPI1	chr12:10320083-10320622	HL-60	blood:	n/a	chr12:10320467-10320476
43	GTF3C2	chr12:10320150-10320676	Hela-S3	cervix:	n/a	n/a
44	BRCA1	chr12:10320144-10320644	Hela-S3	cervix:	n/a	n/a
45	NR2F2	chr12:10320217-10320750	HepG2	liver:	n/a	chr12:10320451-10320466

Variant related genes	Relation type
OLR1	TF binding region
TMEM52B	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838090	1.00[AMR][1000 genomes]
rs34401616	1.00[AMR][1000 genomes]
rs55963190	1.00[AMR][1000 genomes]
rs57041498	1.00[AMR][1000 genomes]
rs57989020	1.00[AMR][1000 genomes]
rs60220961	1.00[AMR][1000 genomes]
rs73251088	1.00[AMR][1000 genomes]
rs73252885	1.00[AMR][1000 genomes]
rs73262640	1.00[AMR][1000 genomes]
rs73262645	1.00[AMR][1000 genomes]
rs73262654	1.00[AMR][1000 genomes]
rs73262700	1.00[AMR][1000 genomes]
rs73264786	1.00[AMR][1000 genomes]
rs73266605	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10313800-10321800	Weak transcription	NHEK	skin
2	chr12:10317600-10320800	Enhancers	Placenta	Placenta
3	chr12:10318400-10321400	Weak transcription	NHLF	lung
4	chr12:10318600-10321800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:10318600-10321800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:10318800-10323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:10319000-10322800	Enhancers	Hela-S3	cervix
8	chr12:10319200-10326200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:10319400-10321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:10319600-10320800	Enhancers	Primary B cells from cord blood	blood
11	chr12:10320000-10320800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr12:10320200-10320600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:10320200-10320600	Enhancers	Liver	Liver
14	chr12:10320200-10320800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:10320200-10321400	Weak transcription	A549	lung
16	chr12:10320400-10320600	Enhancers	HMEC	breast
17	chr12:10320400-10320800	Enhancers	Adipose Nuclei	Adipose
18	chr12:10320400-10322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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