Variant report

Variant	rs73262640
Chromosome Location	chr12:10344422-10344423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11838090	1.00[AMR][1000 genomes]
rs34401616	1.00[AMR][1000 genomes]
rs35775301	1.00[AMR][1000 genomes]
rs55963190	1.00[AMR][1000 genomes]
rs57041498	1.00[AMR][1000 genomes]
rs57989020	1.00[AMR][1000 genomes]
rs60220961	1.00[AMR][1000 genomes]
rs73251088	1.00[AMR][1000 genomes]
rs73252885	1.00[AMR][1000 genomes]
rs73262623	0.83[AFR][1000 genomes]
rs73262645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262700	1.00[AMR][1000 genomes]
rs73264786	1.00[AMR][1000 genomes]
rs73266605	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10337200-10350400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:10339400-10347800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr12:10341800-10345200	Enhancers	Placenta	Placenta
4	chr12:10342200-10345200	Enhancers	NHLF	lung
5	chr12:10342200-10345400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:10342400-10345000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:10342400-10345200	Enhancers	NH-A	brain
8	chr12:10342400-10345400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:10342600-10344800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:10342800-10345000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:10343000-10345200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:10343000-10345200	Enhancers	Hela-S3	cervix
13	chr12:10343200-10345200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr12:10343200-10345200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:10343200-10345200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:10343200-10345200	Enhancers	HMEC	breast
17	chr12:10343200-10345200	Enhancers	NHEK	skin
18	chr12:10343600-10345200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:10343600-10345200	Enhancers	NHDF-Ad	bronchial
20	chr12:10343800-10344600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr12:10344000-10345000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:10344000-10345400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:10344200-10344600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:10344200-10345000	Enhancers	Osteobl	bone
25	chr12:10344200-10345200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr12:10344200-10345200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:10344200-10345200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr12:10344200-10345200	Enhancers	A549	lung
29	chr12:10344400-10344800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr12:10344400-10344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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