Variant report
| Variant | rs60220961 |
|---|---|
| Chromosome Location | chr12:10409150-10409151 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:10407362..10410201-chr12:10824046..10826886,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000060140 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11838090 | 1.00[AMR][1000 genomes] |
| rs34401616 | 1.00[AMR][1000 genomes] |
| rs35775301 | 1.00[AMR][1000 genomes] |
| rs55963190 | 1.00[AMR][1000 genomes] |
| rs57041498 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57989020 | 1.00[AMR][1000 genomes] |
| rs73251003 | 1.00[AFR][1000 genomes] |
| rs73251088 | 1.00[AMR][1000 genomes] |
| rs73252885 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73262640 | 1.00[AMR][1000 genomes] |
| rs73262645 | 1.00[AMR][1000 genomes] |
| rs73262654 | 1.00[AMR][1000 genomes] |
| rs73262700 | 1.00[AMR][1000 genomes] |
| rs73264786 | 1.00[AMR][1000 genomes] |
| rs73266605 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |
