Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10779986	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10779987	0.85[EUR][1000 genomes]
rs11127746	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11127747	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11705789	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13068700	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1851918	0.90[EUR][1000 genomes]
rs1851926	0.87[EUR][1000 genomes]
rs1851928	0.88[EUR][1000 genomes]
rs1969433	0.85[EUR][1000 genomes]
rs4389498	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4452351	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4481177	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6766011	0.90[EUR][1000 genomes]
rs6778265	0.90[EUR][1000 genomes]
rs6790351	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6797240	0.85[EUR][1000 genomes]
rs9817070	0.91[EUR][1000 genomes]
rs9826743	0.88[ASN][1000 genomes]
rs9870954	0.87[EUR][1000 genomes]
rs9877408	0.87[EUR][1000 genomes]
rs9968070	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35779564	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81981200-81986000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:81981800-81983000	Enhancers	Dnd41	blood
3	chr3:81982600-81983000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search: