Variant report

Variant	rs9826743
Chromosome Location	chr3:82017826-82017827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11127747	0.95[ASN][1000 genomes]
rs13085470	0.88[ASN][1000 genomes]
rs35779564	0.88[ASN][1000 genomes]
rs4389498	0.95[ASN][1000 genomes]
rs4452351	0.93[ASN][1000 genomes]
rs4481177	0.89[ASN][1000 genomes]
rs6764033	0.88[ASN][1000 genomes]
rs6790351	0.94[ASN][1000 genomes]
rs7431326	0.89[ASN][1000 genomes]
rs9968070	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82013200-82018600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:82014200-82018400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:82014600-82018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:82015600-82018200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:82017200-82018400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:82017400-82018000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:82017400-82018000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:82017400-82018200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:82017400-82018400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:82017400-82018600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:82017600-82018000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:82017600-82018400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr3:82017600-82018400	Enhancers	Fetal Heart	heart
14	chr3:82017800-82018200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:82017800-82018200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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